Caretta caretta (Loggerhead turtle): 125631101
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Entry
125631101 CDS
T09292
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125631101 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125631101 (SMARCC1)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125631101 (SMARCC1)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125631101 (SMARCC1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125631101 (SMARCC1)
PBAF complex
125631101 (SMARCC1)
GBAF(ncBAF) complex
125631101 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
125631101
NCBI-ProteinID:
XP_048693247
LinkDB
All DBs
Position
2:4259411..4441242
Genome browser
AA seq
1115 aa
AA seq
DB search
MRGGRRVGGAGPRWRRSARVTMAAAVTAGGGPGPGAAAGLAALSVSRRKDGGPTGKFWES
PETVSQLDAVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLP
AKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCL
SRPTIYLIPDIELKLANKLKDIVKRHQGTVTDEKAKATHHIYPNPTSLDDDEWLRPVMKK
DKQVLVHWGFYPDSYDTWVHASDIEAEIEDAPIPEKPWKVHAKWILDTDIFNEWMNEEDY
EVDENKKPVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPMESRKKTGKK
GQAGLYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVA
DLDEQDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVI
ERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVH
AFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHLRAPQVPAAQQMLSFP
EKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVS
EHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVV
DPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARTSGKVDPTYGLESSCIAGTG
PDEPEKLDGVEEEKMETETDGQQSEKVESKGEGEIEEGDKVQEGENERNPEKEQDSEVTS
DTKSEEKESEENKENVDACKDKESEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAA
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQ
LKYAELRARQQMEQQHSQNTQQSHQHSSGPGMNPLGAPGHPGMLPHQQPPPYPMMHHQMP
PPHPPQPGQMPGPGSMIPGQAMPGRMMPSVSTNIHPTSGGPPPSGMPPMSGNIIGPRVPL
AAPNGMYPPPSQQPPPPADGVTPPTAGATPASAAP
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggagggaggcgagtgggaggcgcagggccgcggtggcggcgctcggcgagagta
acaatggcagcggcagtgactgcaggtggcggccccggccccggggcggcggcggggctg
gcggccctgtccgtgtcgcggcggaaggacggcggccccacgggcaagttctgggagagc
ccggagacggtgtcccagctggacgcggtgcgggtctggctggggaagcactacaagaag
tacgttcaggcagatgctccgaccaataaaacattggctgggctggtggtgcagctgctg
cagttccaggaagatgcctttgggaaacatgtcaccaatcctgccttcaccaaacttcct
gccaagtgtttcatggatttcaaagctggaggtacattatgtcatattcttggtgctgct
tacaagtataagaatgaacagggctggcggaggtttgatctgcagaatccatcacgaatg
gatcgaaatgtggagatgttcatgaacattgaaaaaacactagtgcagaataattgtctg
agcagaccaacgatctacctcattccagatatcgaactgaagttggctaataaattaaag
gacattgtcaaacgtcaccagggaaccgtcactgatgagaaggcaaaggccacccaccat
atttatcctaatcctacctcactggatgatgatgaatggttgagacctgtgatgaagaaa
gataagcaggtgttggtgcactggggcttttacccagacagctatgatacttgggttcat
gctagtgacattgaagctgaaattgaagatgctccaattccagaaaaaccatggaaggtt
catgccaaatggattctggacacagatatattcaatgaatggatgaatgaagaggattat
gaggtggatgagaacaagaagccagtgagttttcgccagcgaatctctatgaagaatgaa
gagcctgtccgtagccctgagagaagagaccggaaagcagcagcaagtaccaggaaaaga
aagcattcaccttcccctccccccactcccatggaatcaaggaagaagactggaaagaaa
ggacaagcaggactgtatgggaaaaggcgaggtcagaaagaagaggatgagcaagaagat
cttaccaaggacatggaggacccaacacctgtaccgaacatagaagaagtggtacttccc
aaaaatgtgaacccaaagaaagacagtgaaaacacgccagtgaaaggaggaacagtagca
gacctagatgagcaggatgaggagacagttgctacaggaggaaaggaagatgaagatccc
aacaaaggtgatcagagtcgatccattgacccaggtgaagacaatgtcacggaacagacc
aatcacataattattccaagctatgcatcatggtttgactacaactgtattcatgtaatt
gaacgccgtgctcttccagagttcttcaatgggaaaaacaagtccaagactccagaaata
tacttggcttaccggaacttcatgattgatacgtatcgcttaaaccctcaggagtacttg
accagcactgcctgcagaaggaacctgactggagatgtatgtgctgtaatgagagtgcat
gcctttctggagcagtggggtctagttaactaccaagtggatccagaaagccgtcccatg
gcaatgggccctcctcctactcctcacttcaatgtgcttgctgataccccctctggactt
atgcctcttcatctccgagctcctcaggtccctgctgcccagcagatgttgagctttcct
gagaaaaacaaagaaaagcctactgacctgcagaactttggacttcgcacagacatttac
tcaaagaagaccttggcaaagagtaagggagccagtgctggaagagaatggacagagcaa
gagacactgctgctactagaggctctggagatgtacaaagatgactggaataaagtctct
gagcatgttgggagtcgcacccaggatgaatgcattctccactttctgagacttcccata
gaggacccttatctggagaactctgatgcatccttaggcccattggcttaccaacctgta
cctttcagccagtctggaaacccagtgatgagcactgttgcttttttggcatctgtggtg
gatcctcgggtggcatcagctgcagctaaagctgctttagaggaattttctcgggtccga
gaggaggtaccactggaactagttgaagcccatgtcaagaaagtgcaggaggcagcaaga
acctctgggaaggtggatccaacatatggactagagagcagctgcattgctggaacaggt
ccagatgagccagagaagcttgatggagttgaagaagaaaaaatggaaactgagacagat
gggcaacagtcagaaaaggttgaaagcaaaggagaaggtgaaatagaggaaggtgataag
gtgcaggaaggagaaaatgagagaaatccagaaaaggagcaggacagtgaagtcacttcc
gataccaagtcagaagagaaggagtcagaagagaacaaggaaaacgttgatgcgtgcaaa
gacaaggaaagcgaagctggaaagaagaaagtggaacatgaaatctctgaaggaaatgta
gctacagctgcagctgctgctcttgcctcagctgccaccaaagcaaagcacctagcagca
gtggaagagcgaaagatcaagtccttggtagccctcttggtggaaacacaaatgaagaaa
ctggagatcaaacttcgtcattttgaagagctggaaacaatcatggacagagagaaggag
gcattagagcagcagaggcagcagctgctgacggagcgacagaacttccacatggagcag
ctgaaatatgcagagttaagggctcgccagcaaatggagcagcagcacagtcagaacaca
caacaatcacaccagcattccagtgggcctggcatgaacccacttggggcaccgggtcat
ccgggcatgctgccccatcagcagccccctccatatcctatgatgcaccaccagatgccc
ccccctcatccaccacagccaggacagatgccagggccaggttcaatgatacctgggcag
gccatgccaggccggatgatgccatctgtgtccaccaacatccacccaaccagtggtggc
cctcccccatctggcatgccaccaatgtcaggaaacataattggacctcgtgttccccta
gcagcgccaaatggcatgtatccccctccatcgcagcagccgccaccaccagctgatggg
gtgactccacctacagcgggtgcaacgccggcctcagcagctccctaa
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