Caretta caretta (Loggerhead turtle): 125631241
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Entry
125631241 CDS
T09292
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
125631241 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ccay01002
]
125631241 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125631241 (SHH)
Peptidases and inhibitors [BR:
ccay01002
]
Cysteine peptidases
Family C46: hedgehog family
125631241 (SHH)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Morphogens
125631241 (SHH)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
125631241
NCBI-ProteinID:
XP_048693559
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Position
2:complement(19589546..19608945)
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AA seq
431 aa
AA seq
DB search
MDEMLLLTRILLVGFLCVLLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKRVRDLSPGDRVLAADAQGRLLYSD
FLAFLDRDHGAPKLFYVIETRQPRARLLLTAAHLLFVAPPHNHSQPQPQPGAARSRALFA
SRVRPGQRVYVLGEGGRRLLPAAVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIE
EHSWAHWAFAPFRLAHALLAVLSPSASLPAPPEAEPAPPGLHWYSRLLYRIGSWVLDSDS
LHPLGMAVQAS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctgttggtgggcttcctctgcgttctcttg
gtctcctctgggctgacgtgtggaccaggcaggggtattggaaaaaggagacaccccaaa
aaactgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatctcaagaaactcggagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacactggagctgacagactg
atgactcagagatgcaaagacaagctgaacgccctggcgatctcggtgatgaaccagtgg
cccggagtgaagctgagggtgaccgagggatgggatgaagatgggcaccactccgaggag
tcgctgcactacgagggccgggccgtggacatcactacgtcggacagggaccgcagcaag
tacggcatgctggctcggctggcggtagaggctggcttcgactgggtctactacgagtcc
aaggcccacatccactgctccgtcaaagcggagaactcggtggccgccaagtcgggcggc
tgcttcccgggctcggccacggtgcacctggagcagggcggcaccaagcgggtgcgggac
ctgagccccggggaccgcgtgctggcggcggacgcgcagggccggctgctctacagcgac
ttcctggccttcctggaccgcgaccacggcgcccccaagctcttctacgtgatcgagacg
cggcagccgcgggcgcgcctgctgctcaccgccgcccacctgctcttcgtggcgcccccg
cacaaccactcccagccccagccccagcccggggcggcccgcagccgcgcgctcttcgcc
agccgcgtgcggccgggccagcgggtctacgtgctgggcgagggcggccggcggctgctg
ccggccgcggtgcacagcgtctcgctgcgggaggaggcctcgggggcctacgccccgctc
acggcccagggcaccatcctcatcaaccgggtgctggcctcctgctacgccgtcatcgag
gagcacagctgggcgcactgggccttcgcccccttccgcctggcccacgccctgctggcc
gtgctctcccccagcgccagcctgcccgccccgcccgaggcggagcccgccccgccgggc
ctccactggtactctcgcctcctctaccgcatcggcagctgggtgctggacagtgactcc
ctgcacccgctgggcatggccgtgcaggccagctga
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