KEGG   Caretta caretta (Loggerhead turtle): 125631835
Entry
125631835         CDS       T09292                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay04140  Autophagy - animal
ccay04148  Efferocytosis
ccay05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    125631835 (VPS41)
   04148 Efferocytosis
    125631835 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    125631835 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccay04131]
    125631835 (VPS41)
Membrane trafficking [BR:ccay04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    125631835 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin Vps39_1 TPR_PEP5_VPS11 zf_RING_Vps8_fungal WD40_CDC20-Fz Beta-prop_HPS5 ANAPC4_WD40 Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st zf_RING_Vps8 Beta-prop_RIG_2nd zf-RING_5 zf-RING_11
Other DBs
NCBI-GeneID: 125631835
NCBI-ProteinID: XP_048695099
LinkDB
Position
2:96499064..96675121
AA seq 911 aa
MASVFSVKGKPSHNNVDGRLHLVRCIVKLAKSEINYTGDMASADFTSGQEIRSNEESTDD
SERFVSVLPTEVQHLVKEDESEEEPKLKYERLSNGVTEILQKDAASCMTVHEKFLALGTH
YGKVYLLDVQGNITQKVDISPVKINQISLDESGEHMGICSEDGKVQVFGLYSGEEFHETF
DCPIKIVAVHPQFVRSHCKQFVTGGKKLLLYEKTWMNRWKPSVLHEGEGNIRNVKWRGHL
IAWANNMGVKILDVISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGTSVKICLV
KERHASEMRDLPSRYVEIIFQFDTEFYISGLAPLCDQLVVLSYVKEVSEKTEMECCARPR
LDIIQPLPESCEEISSDALTVRGFQENECRDYHLEHSEGESLFYIISPRDIVVAKERDQD
DHIDWLLEKKKYEEALMAAEISQKTIKKHRILDIGLAYINHLVEKGEYDLAARKCQKILG
KNTELWEFEVYKFKEIGQLKAISRYLPRRDPILKPLIYEMVLHEFLESDYEGFAMLIKEW
PGDLYNNAIIVQVVVDHLKKDPQNRTLLRTLAELYTYDQRYGKALEIYLTLRHKDVFQLI
HKHNLFSSIRDKIVLLVDFDSEKAVDMLLDNEDKISIDKVVEELENRPELQHVYLHKLFK
RDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEEMVYLLSRM
GNSRSALKMIMEELNDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDP
ILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGI
RVDEENICESCLSPILPSDASKSFSVTVFHCRHMFHKECLPVPSTMSPLQFCNICSAKHR
GPGSAILEMKK
NT seq 2736 nt   +upstreamnt  +downstreamnt
atggcatctgtttttagtgtaaagggaaaaccctcccacaacaacgtggatggaagactg
catttggtgagatgcattgtcaagcttgccaaatcagagattaactatacaggagacatg
gcatcagcagatttcaccagtggacaggaaatcagatctaacgaagaatctacagatgat
tctgagcgttttgtgtctgtccttcctactgaggtgcagcatcttgtaaaggaagatgag
agtgaagaagaacccaagctgaagtatgaaaggctttctaatggagtgactgaaattctc
caaaaggatgcagccagttgcatgaccgtgcatgaaaagtttttggcactgggcacacat
tatggcaaggtttatttacttgatgtccagggaaacatcacccaaaaggttgacattagc
ccagtgaagataaatcagatcagcctggatgaaagtggagaacatatgggcatctgctcg
gaagatggcaaggtgcaggtatttggattgtattcaggagaagaatttcatgaaacattt
gactgtcctatcaaaattgttgctgtccaccctcagtttgtaagatcccattgcaaacag
tttgtaacgggaggaaaaaagttgctattatatgagaagacttggatgaacagatggaag
ccttctgttttacacgaaggagaaggaaacataagaaatgtaaaatggagaggacactta
attgcttgggccaataatatgggtgtgaagatacttgacgtgatctccaagcaaagaatt
accaatgtgcctcgtgatgatataagccttcgcccagatatgtatccctgcagcctttgc
tggaaggataatttaacactgattattggctggggaacttcagtaaagatatgtttggta
aaggagcggcacgccagtgaaatgcgagacctgcccagccgctatgtagaaataattttc
cagttcgatactgaattctacatcagtggacttgcacctctctgcgaccagcttgttgta
ctttcatacgtaaaggaggtttctgagaaaacggaaatggaatgttgtgcaagacctaga
ctggatattattcaacccctacctgagtcttgtgaagagatctcctctgatgctctgact
gttcgaggattccaagaaaacgaatgtagagattatcatttagagcattctgagggtgaa
tcgctgttttacattattagtccaagagatattgttgtggctaaagagcgggaccaagat
gaccacattgactggcttcttgaaaagaagaaatatgaagaggctttgatggcagctgag
atcagtcagaagaccataaaaaaacataggattttggacataggcttagcttatataaat
catctagtggagaaaggagagtatgacttggctgccagaaaatgtcagaaaatacttgga
aaaaacacagaactctgggaatttgaagtttataaatttaaagaaataggacaacttaag
gcaattagccgttatttgccgagacgggatccaattctgaagcctctcatctatgaaatg
gtcctgcatgagtttttggagagtgactatgagggtttcgcaatgctgataaaagagtgg
cccggagatctctataacaatgcgatcatagttcaagtagtagtggatcacctgaagaaa
gatccacagaataggaccttgctcagaactcttgcagaactatacacctatgaccaacgc
tatggcaaagctcttgaaatttacctaacactgagacataaagatgtttttcagttgatc
cataaacataatcttttcagttctatcagagacaaaattgttctacttgtggattttgat
tcagagaaagcagtggacatgctattggataatgaagataaaatttcaatcgacaaagtt
gtagaagaattggaaaacagacctgagttacaacatgtgtatttgcataagcttttcaaa
agagatcatcataaaggacagaggtaccatgagaaacagatcagtctctacgctgaatac
gatcgtccaaacctgctgccatttctcagagacagtacacattgtccattagagaaggct
cttgagatctgtcaacagaggaactttgtagaagagatggtctatctgctgagcagaatg
gggaatagccgtagtgcactgaagatgataatggaagaattgaatgatgtagataaggct
attgaatttgccaaggaacaagatgatggagaactatgggaagacctcattttatattct
atcgacaaaccaccttttattactggtttgttaaacaacattggtacccatgttgacccc
attcttctgattcaccgcattaaggaaggcatggagattcctaatctgagagattccctt
gtgaaaattctccaggattacaatttgcagattttgctacgtgagggatgcaagaagata
cttgttgcagactcgttgtccctattgaagaaaatgcaccgaactcaaatgaaaggcatc
cgtgtggatgaggagaatatctgtgaatcgtgtctttcccctatacttccttcagatgca
tccaaatccttcagtgtgacagtgttccattgcaggcatatgtttcacaaggagtgcctc
cctgtacctagcacaatgtccccattgcagttctgcaacatctgcagtgctaagcacaga
ggaccaggcagtgcgatcttagaaatgaaaaaatag

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