Caretta caretta (Loggerhead turtle): 125632046
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Entry
125632046 CDS
T09292
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125632046 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125632046 (DROSHA)
03009 Ribosome biogenesis [BR:
ccay03009
]
125632046 (DROSHA)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125632046 (DROSHA)
Enzymes [BR:
ccay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
125632046 (DROSHA)
Messenger RNA biogenesis [BR:
ccay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
125632046 (DROSHA)
Ribosome biogenesis [BR:
ccay03009
]
Eukaryotic type
90S particles
RNase
125632046 (DROSHA)
Prokaryotic type
rRNA processing factors
125632046 (DROSHA)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
125632046 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
YcaO
Cro
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
125632046
NCBI-ProteinID:
XP_048695627
LinkDB
All DBs
Position
2:complement(141375130..141478590)
Genome browser
AA seq
1333 aa
AA seq
DB search
MSFHSGRGCPRGRGGPGVRTSTQTFRPQNLRQLHPQQPSVQYQYDQQVAPPTTYSSPPAT
GYVPPRPDFIPYPSLVPPSTQSPISQCPMRPPFPNHQVRQSFPVPPCFPPAPPPVPNPSS
SPVPGAPTGQNTFPYMMPPPAMPHPPPPPVMPQQVNYQPVYSTGYSQQSFPPPNFNSYQQ
NSNSFQSSSSSRSSHFRHASQYQVEKAQSERRSPERSKHYDEHRHREHSHVPGDRHRPSN
HGDRRGDRGRSPDRRRQESSRHRSDYDRGRTPPRHRSYERSRERERERHRHRDSRRSPSS
ERSYRKDYKRTGSRSPSRERKRPRWEEERERWSENQSASKEKNYTAIKDKEPEEIISEKN
EEEEEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSRLRDLYERFEEELGKRQAKAK
AARPPWEPPKTKLDEDLESSSESDCDSDDNSTCSSSSDSEVFDVIAEIKRKKAHPDRLHE
ELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEPIKPCRPMTNNAGRLYHYRITVSP
PTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENF
CVRGLELFSLYLFRDILELYDWNLIGPSFENNSCCPRFHFMPRFVRFLPDGGKEVLSMHQ
ILLYLLRCNKPLVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDREQ
FNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLSQR
EEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDK
LIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKG
INTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRT
AIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAK
HLFGRLLFNDTDLQEVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFTHV
RLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSL
VNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFM
NVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVA
VYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREH
QEREPEETEEVRK
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctggacgaggatgcccacggggtcgaggaggacctggagtaagaacg
tcaacacaaaccttcagacctcagaacctgagacagcttcaccctcagcagccttcagtg
cagtaccaatatgaccaacaagtagctcctccgactacctactcaagccctccagccaca
ggctatgtgcctcctagaccagattttataccgtatccgtccctggtacctccttcaact
cagagtccaatcagccagtgtcccatgaggccaccttttccaaaccatcaagtaaggcag
agttttccagtccctccttgtttccctcctgctcctccaccagtcccaaatcccagtagt
tccccagtaccaggggcccctactggacaaaacacttttccctatatgatgccacctcct
gcaatgcctcatcctccaccaccaccggtgatgccgcagcaagttaattatcaacctgtc
tactctacgggctattctcagcagtctttcccacctcctaattttaatagttatcaacag
aactcaaactcctttcagagcagcagcagcagcaggagcagtcatttccggcacgcaagc
caatatcaggtagaaaaggcccaaagtgaacgaaggtctccagagaggagtaagcactac
gatgagcaccggcaccgcgaacatagtcacgtgcccggggacagacaccggcccagtaac
catggggatcggcggggggatcgaggcaggagtcctgacaggagaaggcaagaaagcagt
cggcacaggtcagattatgacagaggaaggactccacctcgccacagaagttatgaacga
agcagggaacgggagagggaaagacataggcatcgtgatagccgacgatcgccatcttcg
gagaggtcctacagaaaagattacaaaagaacagggagccgatcccccagccgggagaga
aagagacctcgatgggaggaggagagagagaggtggtcagagaatcaaagtgccagtaaa
gagaagaattacactgctattaaagacaaagagccagaggagatcatttctgaaaaaaat
gaagaggaagaggaagaattgctcaagcctgtatgggttcgttgtacccattcagaaagt
tactattcaaatgaccctatggatcaagtgggggactccacggtggttggaacaagtcgg
ctccgagatttgtatgaaaggttcgaggaggagttaggaaagcgacaagcaaaagccaaa
gcagcccggccaccatgggagccaccaaagaccaaactcgatgaggatttagagagctcc
agtgagtccgactgtgactcggatgacaatagcacctgttctagcagttcagattctgaa
gtgtttgacgttattgcggaaattaagcgtaaaaaagctcaccctgatcgtcttcatgag
gagctctggtacaatgaccccggacagatgaatgatgggccactgtgcaaatgcagtgct
aaagccagacgaacaggaataagacacagcatttatcctggtgaagagcctattaagcca
tgccgccccatgaccaacaatgctggaagactgtaccactatcgaattacagtgtcacct
cccacaaacttcttaacagacaggccaactgttatagaatatgatgaccacgagtatatt
tttgaagggttttctatgtttgcacatgctccactgacaaatattcctctatgtaaagta
atcagatttaacattgactatactattcatttcattgaagagatgatgcctgagaatttt
tgtgtgagaggacttgaattattctctttgtatctattcagagatattttggaactctat
gactggaatcttataggtccttcatttgaaaacaattcttgttgtccaagatttcatttc
atgccacggtttgtgaggtttcttccagatggagggaaagaagtgctgtcaatgcatcag
atcctactctatttgttacgatgcaacaaacctttagtcccagaggaggagattgccaat
atgcttcagtgggaagagctggaatggcagaaatatgcagaagaatgcaaaggaatgatc
gttaccagtcctggcatgaaacccagttcagttcgtattgatcaactggaccgtgagcag
ttcaaccctgatgtaattactttccccattattgttcacttcgggatacggcctgctcaa
ctcagttatgctggagaccctcagtaccaaaagctatggaagagctatgtgaagctgcgc
catctgctggctaacagtcccaaagtcaaacaggctgataaacagaagttatcccagaga
gaggaagcgctacagaaaatcaggcagaaaaacacaatgagacgagaagtgaccgtggag
ttaagcagccaaggattctggaaaaccggcattcgttctgatgtctgccagcatgcaatg
atgcttcctgttctcacccaccatattcgctaccatcaatgtctgatgcatttggacaag
ttgataggctacacttttcaagatcggtgcttgctacagcttgccatgactcatccaagc
catcacctaaacttcggaatgaatccggaccacgcaagaaattccttgtccaattgtggg
attcgacagcccaagtatggagaccgaaaagtccatcacatgcacatgagaaaaaaggga
ataaacaccttgataaacattatgtcccgccttgggcaagatgatcctactccttccagg
attaaccacaatgaacgtttagaatttttgggagatgctgtggtggaatttttaactagc
gtccatttgtactacctgtttccaagcctagaggaaggggggttagctacatatcgcact
gccattgttcagaaccagcatcttgctatgctggccaagaaactggaactggatcggttt
atgctttatgctcatggacctgacctttgtagggaatcggatctacgtcatgcgatggcc
aactgttttgaagccttaataggagctgtttacctggagggaagcctagaagaagccaaa
cacttatttggacgtttactctttaatgacacggacctacaggaagtatggcttaattac
ccactacacccactccaactgcaagaatccaacactgatcggcaacttatcgagacttcc
ccagttctccagaaacttaccgagtttgaggaagcaattggagtcatttttactcatgtt
cgacttttggcgcgggccttcactttgagaactgtgggatttaaccacctgactctaggc
cacaatcagaggatggaattcctgggtgactccataatgcaattggtagccactgagtac
ttattcattcatttccctgatcatcacgaagggcacttaacgttgttgcgaagctcattg
gtgaacaacaggacacaggccaaagtagcagaagagctgggtatgcaggaatttgccatc
actaacgacaagacgaagagacctgtggctcttcggactaagactttggctgatctcttg
gagtcttttattgctgcactttacattgataaggatttggagtatgttcacactttcatg
aacgtgtgcttttttccacgattaaaggaattcattttaaatcaggattggaatgaccct
aaatcccagcttcagcaatgctgcctgactctcaggacggaaggaaaagagccagacatt
cctctgtacaagaccctgcagacagtgggaccttctcatgccagaacatatacagtcgct
gtttatttcaaaggggaaagaataggatgtggtaaaggtccaagtattcaacaagcagaa
atgggagctgctatggatgcgcttgaaaaatataactttccccagatggcccatcagaaa
cggttcattgaacggaaatacagacaagagttgaaagaaatgaggtgggaaagagagcat
caagagagagagccagaggagaccgaagaagtaaggaaataa
DBGET
integrated database retrieval system
