Caretta caretta (Loggerhead turtle): 125632454
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Entry
125632454 CDS
T09292
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor Sox-17-alpha-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
125632454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccay03000
]
125632454
Transcription factors [BR:
ccay03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125632454
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
AppA_4HB
Motif
Other DBs
NCBI-GeneID:
125632454
NCBI-ProteinID:
XP_048696634
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All DBs
Position
2
Genome browser
AA seq
399 aa
AA seq
DB search
MSSPDAGYASSDDQTQARCSLPIMMPALGPCQWAESLSPLADAKVKSEAAPAGAASSRAK
SESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKAWKALSLAEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRLKRVESGFLPHGLAEAPGAELASEGSRMCVESLALP
YPEQGYPAVQSALPPALGHYRDCQPLAAAFDGYNLPTPDPSPLDAAESEPAFFTPPLQDE
CQLAPYGYPAAEYPXHGAESQASAALRRHLPRAEPLGQLSSLQSLLGCQGPLHAYYGQLC
QPAGPARAPQLPPQPCQPSPPPEAQQCREPLEHLSQDDLLGDVDRTEFEQYLHFACKPEL
GLHFQGHEAGLPAPDAHGPISSVVSDASTAVYYCTYPDA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcgggatacgccagcagcgacgaccagacgcaggcaaggtgctcg
ctccccatcatgatgccggccctgggtccctgccagtgggcagagtccctgagccccctc
gcagacgccaaggtgaagagtgaggcggccccggcgggggctgcgagcagccgggccaaa
agcgagtcccgcatccgccggcccatgaacgccttcatggtgtgggccaaggacgagcgc
aagcggctggcgcagcagaacccggacctgcacaacgcggagctcagcaagatgctgggg
aaggcctggaaggcgctgtcgctggcggagaagcggccgttcgtggaggaggcggagcgg
ctgcgggtgcagcacatgcaggaccatcccaactacaagtaccggccgcgccggcggaag
caggtgaagcgcctgaagcgcgtggaaagcggcttcctgccgcacgggctggcggaggcg
ccgggcgccgagctggccagcgagggcagcaggatgtgcgtggagagcctggccctgccc
tacccggagcagggctaccccgccgtgcagagcgcgctgcccccggcgctgggccactac
cgggactgccagcccctggctgccgccttcgacggctacaacctgccgaccccggacccc
tccccgctggacgcggcggagagcgagccggccttcttcacgccgcccctgcaggacgag
tgtcagctggcgccctacggctaccccgcggccgagtacccgncgcacggcgccgagagc
caggccagcgccgcgctccgcaggcacctgccccgcgccgagccgctgggccagctcagc
tccctgcagagcctgctgggctgccagggccccctgcacgcctactacgggcagctgtgc
cagcccgccggcccggcccgcgctccccagctcccgccgcagccctgccagccctcgccg
ccgcccgaggcgcagcagtgcagggagcccctggagcacctgtcgcaggacgacctgctg
ggcgacgtggatcgcaccgaattcgagcagtacctgcacttcgcctgcaagcccgagctc
gggctccacttccagggccacgaagccggcctgcccgcgccggacgcccacgggcccatc
tcctcggtggtttcggatgcaagtactgctgtgtattactgcacttacccggacgcctaa
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