Caretta caretta (Loggerhead turtle): 125632532
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Entry
125632532 CDS
T09292
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125632532 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125632532 (PCF11)
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125632532 (PCF11)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125632532 (PCF11)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125632532 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
125632532
NCBI-ProteinID:
XP_048696807
LinkDB
All DBs
Position
1:16773459..16801683
Genome browser
AA seq
1747 aa
AA seq
DB search
MSGPESSAGGAEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSAEESPAPTSTVS
SSGTSTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGATTMGSVQASSKQHVSQTPHMTVKAPHQTSVQSEKNRPSPSSQFHDVKVVNRDPRLNR
MAQHSSHVKDQSHRKEFLSTTSQSDIKANKTLQAEKQNLSKQEKLKSSEKTQKKELDQLD
AKSKSPSPLKSKLSHTKDAKSQECEGIKVSEISKRDPRLKKHLQEKPDGKDDDTKEKRKS
MERKEKEEHKTSEHRPVGSRNKVINGIVQKQDSITEESEKQGGKLGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKLRQSGPKQSHVEEFTLTTREERNSN
KRNLKQDTRDPRRLKKTQEDRPQETANQHSTKSTPEPKENVENWQSSKSSKRWKSGWEES
KNPQQNDEHQVSSKSPHQRHREIWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGMKKKPLLS
DAELTYYEHKAKLKRTQVQHSFPRLDLLDPDDILGYDLTDALLSGIECEQTKGKRGGQFD
RKEQFGERSRRHSPISGSRPYADDLSPLESRRRHDEQNPSKGTRSSKNFDPYDSWGESDE
FRDALRQQGKSIPEFQKIDGDGFCKFDNREERQMVGQSGVREEPRSPFSERFKRPRYEDP
EKTPFIESPGSRFAGIDVKKRLGALMEDRPLFDGSPRQPAARGGGDGQAGHFVDGPSNNS
SPRIEGPPAQAALRFEGPLGQVGGGPASQFDGPLGQAGGGGALRFDGPPGQIGTLRFEGP
LGQVGAGGALRFESPLGQVGGALRFEGPVGGRRLEGPVGQTMGGLRFEGPHGQPSGGLRF
EGPHGQPMGPHGQPAGGLRFEGPHGQPMGPRGQPGSGLRFEGPHIQPMGHHGQPGSGLRF
EGPHGPPVGPHGQPGGSLRFEGPHGQSVGPHVQGGGGLRFEGPHVQPGLGPRFEGPSVQT
GGGLRFEGPLGQTGPRFDGCHSSRFDSQPGQLSLLQRFDGLHGQPGPRFERAPGQQTPPR
FDGPPGQQPRFDTPIPQRFDGPQHQPGSRFAMPLGLQGPRFENVANPPASRLESYGQTGP
YSEHPSQTYNGPSHGMQFQRPEMFDASQGPNFNGPPGPGAQNFPNPLNRASGHYFDDKNL
QGPQYGNFNTLPNSMSVGNTQQPQQVPGLSVSSQPGPYSQGQTYLPVLAQNPGSFVQTQA
GSLPLSYPDNHLGQLDVNELFSKLLSTGILKVSKTTDSTSAQVNETSTQPAPEEEEDDQE
QSEDQDIPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQ
NRTEKDISRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKE
FQSVPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTSSF
DCTPSPSKTPVENPLNIMLNIVKQEIQEPCNSPKVKEEPVDTPATCMEESTPASTDIKTE
TDKVEPV
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggagagcagcgcaggcggcgccgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctccttctacagagaagcttcctgttatgtaccttatggattccattgtc
aagaacgttggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgaaattttccctttgaagaaactgtatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctacccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcggctgaggaatctcctgcacctacttctacagtcagt
tcatctggtacctcaactcctccagctgttcctgaaattcagaaaaatttgacccaagag
caactaataagacaacaactgctggcaaagcaaaaacagttgttggaacttcaacagaaa
aaattagagctggagctagaacagactaaagcccagttggcagtttctcttagtgttcaa
caaggggcaaccaccatgggttcagttcaagcatcttccaaacaacatgtttcacagact
cctcatatgacagtcaaagctcctcaccagacttctgtgcaatctgaaaaaaacagacca
tctccatcttctcagtttcatgatgtcaaagtagtaaacagagatcctcgtcttaatagg
atggctcaacattcttctcatgttaaagatcaaagtcataggaaagaatttctgtctacc
acaagtcagtctgatatcaaggcaaacaaaacactgcaggctgaaaaacaaaatttgtca
aagcaagaaaagttaaaatcaagtgagaaaacacagaagaaagaacttgatcagttagat
gcaaaatctaaatcaccatcccctttgaaaagcaagttatcccatactaaagatgctaaa
agccaagaatgtgagggtataaaagtatctgaaattagtaaaagagatccaagattaaaa
aagcatcttcaggagaagccagatggtaaagatgatgacacaaaggaaaagaggaaaagt
atggagcgaaaagaaaaagaggaacataagacatctgaacacagacctgttggcagcaga
aataaagtaattaatggcattgttcaaaaacaggactctattacagaagagtcagaaaaa
cagggtggaaaacttgggagatcaagtaatagaaaaaggtcccgatcacgctctcctaag
tctcgatcgccatctacccattcaccaaagagaagagagaggagatcacccaaaagaaga
ctgaggagtttgtctcctacttcctcgactcctaaaattggaaagctccgtcagtcaggg
cctaagcaatctcatgttgaagagtttacactaactacaagggaagaaagaaattctaat
aagaggaaccttaaacaggatacacgagatccaaggagattgaaaaaaactcaagaagac
agaccacaggaaactgcaaatcagcattctacaaagtccactccagaaccaaaggagaat
gtggaaaattggcaaagttccaaatcaagcaaaagatggaaatctggttgggaggaaagt
aaaaatccacagcagaatgacgaacatcaagtatctagtaaatctcctcatcagaggcac
agggagatctgggcggccagtaaaggaattttgtcacctcgagccccaaagcaacagcat
cgattaagtgtggatgccaatttgcagattcccaaagaattgacttctgcaagcaaacga
gagctacttaaaaaggcaaatgaacgtttgacatctggggaaataacacaagatgagttc
cttgttgtggctcatcagattcgtcaactgttccaatatcaggaaggaaagcacagatgc
aatgtgtgggatagtcctacagaagaaaaatgtggtatgaagaagaaaccccttctgtct
gatgctgaattaacgtattatgaacataaagctaaactgaaaagaacacaagttcagcat
tcatttccaagacttgatctgttagatcctgatgatattttagggtatgatttgactgat
gcattgctttctggaatagaatgtgagcaaacaaaaggtaaacgtggaggacagtttgac
agaaaagagcaatttggagaaaggtcaagacggcattctcctataagtggcagtagacct
tatgctgatgatctttcaccacttgagagccggcgaagacatgatgagcaaaatccgtca
aaaggaacaagaagttctaaaaacttcgatccttacgatagctggggagaatcagatgaa
tttagagatgcactcaggcaacaagggaaaagtataccagaatttcagaaaattgacgga
gatggattctgcaaatttgataatcgtgaagaaagacagatggttggacagagtggtgtt
cgagaggaaccaagatccccattcagtgaacgtttcaagagacctagatatgaagatcca
gagaaaacaccatttatagagagtccaggatcaagatttgcaggcattgacgtaaagaag
agattaggtgcactcatggaagacagaccactatttgatggctcacctagacaacctgct
gcaaggggagggggagatggacaagctggtcattttgttgatgggccttctaataattca
agccctagaattgaagggccacctgcacaggctgctttgaggtttgaagggccactaggt
caggtgggaggaggacctgcctctcagtttgatgggccactgggacaggcagggggaggg
ggtgccctgaggtttgatgggccaccagggcagataggcaccctcaggtttgaggggccc
cttgggcaagtaggtgcagggggtgcactaaggtttgaaagcccgctggggcaagtaggg
ggtgctttaaggtttgaggggcctgtgggtggtcgcaggttagaggggcctgtaggccag
actatgggtggtctcagatttgaggggcctcatggtcagccatcgggtggtctcaggttt
gagggaccccatggtcaacctatggggcctcatggccagccagcgggtggactcagattt
gagggaccccatggtcagcctatggggcctcgtggtcaaccagggagtgggctcaggttt
gaggggccacatatccagccaatggggcaccatggtcaaccagggagtgggctccgtttt
gaggggccacatggtccgcctgtggggccacatggtcaaccgggaggaagtctgcgtttt
gaggggccccatggtcagtctgtagggccacatgtccagggagggggtggtctcaggttt
gaaggtccacacgtccagccaggacttggtcctaggtttgagggtccatcagtccagact
gggggtggacttagatttgaagggcctttgggtcagactggtccaagattcgatggctgt
cattcgtccagatttgatagtcaacctggtcagctatcccttttgcaaagatttgatggt
ttacatggacaacctggcccaagatttgaaagggcacctggtcaacagacacctcctagg
tttgatggaccacctggtcagcagccacgattcgatacaccaatacctcaaaggtttgat
ggtcctcaacaccagccaggttcaaggtttgcaatgccccttggtcttcaaggtccaagg
tttgaaaatgtagctaaccctcctgcctcaagactggaatcttacgggcaaactggtcca
tacagtgaacatcccagtcagacttacaacggaccatcccatggtatgcagttccagaga
cctgaaatgtttgatgcctctcaaggaccaaattttaatgggccacctggccctggagca
cagaactttcccaatccacttaacagagcatctggacattattttgatgacaagaatctt
cagggtcctcaatatggaaactttaataccttgcctaattctatgtcagtaggaaatact
cagcaaccacagcaggttcctggtctatctgtgtcttctcaacctggaccttacagtcaa
ggacaaacatatttaccagtacttgcacaaaatcctggaagctttgttcagactcaagca
ggatcccttccactttcatatcctgataatcaccttggccagcttgatgtaaatgagttg
ttctctaaactgctttcaacaggaatcctcaaagtgtcaaaaactactgattccacttca
gcacaagtgaatgaaacttctacccagccagctcctgaggaggaggaggatgaccaggag
cagagtgaggatcaagacatcccagacctcactaactttacagttgaagaactaaaacag
cgttatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtggaatg
aggtttacaacttcacagacggatgtatatgcagatcatttggactggcattaccgacaa
aatcgcactgaaaaggacattagcagaaaagttactcacagaaggtggtactacagttta
acagactggatagaatttgaagaaatagctgatctagaggaacgtgcaaagagccagttc
tttgaaaaagtacatgaagaagttgtattgaagacacaagaagctgctaaagaaaaagag
tttcaaagtgttcctgctggaccagcaggagtagatgagagctgtgaaatttgccaagag
caatttgaacaatattgggatgaagaagaggaagagtggcatctaaagaatgctattagg
gtagaggaaaagatttaccatccatcatgttatgaagattaccaaaagacatcatcattt
gattgtacaccatctcccagcaagacccctgtggaaaacccactaaatattatgttgaac
attgtcaaacaagaaatacaggagccctgtaacagtcctaaagtcaaagaagaacctgtc
gacacccctgctacttgtatggaagagagcacacctgcgtctacagatattaaaacagaa
actgataaggttgaaccagtttaa
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integrated database retrieval system
