Caretta caretta (Loggerhead turtle): 125632715
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Entry
125632715 CDS
T09292
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125632715 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
125632715 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125632715 (PABPC1)
03041 Spliceosome [BR:
ccay03041
]
125632715 (PABPC1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125632715 (PABPC1)
mRNA cycle factors
Stress granule specific factors
125632715 (PABPC1)
Spliceosome [BR:
ccay03041
]
Complex C
Other components
Complex C specific factors
125632715 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
125632715
NCBI-ProteinID:
XP_048697321
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All DBs
Position
2:complement(226769186..226793547)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAALPPTQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcttccctgtacgtgggggacctgcacccc
gacgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgccgggacatgatcacccgcaggtctctgggctacgcctatgtcaacttccag
caacccgccgacgctgaacgagctttggataccatgaactttgacgtcattaaaggcaag
ccagtgcgcatcatgtggtctcagcgtgatccatctctgcgcaaaagtggtgtcggaaac
atcttcatcaagaacttagacaaatcaattgataataaagctttgtatgatacattttct
gcttttggaaacatcctctcctgtaaggtagtatgtgatgaaaatgggtctaagggctat
ggatttgtacattttgagacacaggaagcagcggaaagagctattgaaaaaatgaacggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcccgtaaagaacgagaa
gcagaacttggagctagagcaaaggagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgaaagacttaaggaactctttggcaagtttggccctgccttaagtgtg
aaagttatgaccgatgagagtggaaaatccaaaggctttggctttgttagctttgaaaga
catgaagatgcccagaaagctgtggatgagatgaatggaaaggagctcaatggaaagcaa
atttatgttggccgggctcagaaaaaagtggaaagacaaacagagctcaagcgcaaattc
gaacaaatgaagcaggataggatcaccagataccagggtgtaaacctttacgtgaaaaat
cttgatgatgggattgatgatgagcgtctacgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggtggccgcagcaaaggatttgggtttgtatgcttt
tcttcaccagaagaagcaaccaaagctgtcacagaaatgaatggtagaattgtggccact
aaaccattatatgtagctctagcccaacgcaaagaagagcgccaggctcacctcaccaac
caatatatgcaaagaatggcaagtgtgagagcagtacctaatcctgtaatcaacccctac
caaccagcacctccttcaggttacttcatggcagctctcccaccgactcagaaccgtgct
gcatattatccaactagccaacttgctcaactcagaccaagtcctcgctggactgctcag
ggtgctagacctcatccattccagaacatgcctggtgctatccgcccagcagctcccaga
ccaccatttagtaccatgagaccagcttcttcacaggttccacgagtcatgtcaacacaa
cgtgttgctaatacatcaacacagacaatgggtccgcgtcctgcagcagctgctgctgcg
gccactcctgctgtacgcacagttccacagtacaagtatgctgcaggtgttcgtaatcct
caacaacatcttaacacacagccacaggttgctatgcagcagccagctgtccatgtgcaa
ggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaagcag
atgttaggtgaacggctgtttccccttattcaagctatgcaccctactctggcgggtaaa
atcaccggtatgttgttggagattgacaactctgaactccttcatatgcttgagtctcct
gagtctcttcgttcgaaggttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgctcagaaagcagttaacaatcccactggggttccaagtgtttaa
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