Caretta caretta (Loggerhead turtle): 125633263
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Entry
125633263 CDS
T09292
Symbol
POLR1B
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125633263 (POLR1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125633263 (POLR1B)
Enzymes [BR:
ccay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125633263 (POLR1B)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125633263 (POLR1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
125633263
NCBI-ProteinID:
XP_048698267
LinkDB
All DBs
Position
3:2864482..2902359
Genome browser
AA seq
1137 aa
AA seq
DB search
MEAAAAARWRGLPERPSLAPLTAPGYGRPRERQHPALQELTRAHVESFNLAVGEGLHRAV
QAVPALEFAFKNERITLAVVGAVISPPMVPKGSICKELKVYPAECRGRRSTYRGKLTADI
SWSVNGIPKGIIKQSLGYVPIMVKSKLCNLHSLPPRALIEHHEEEEEMGGYFIVNGIEKV
IRMLIMPRRNFPIAMIRPKWKSRGPGYTEYGISMHCVRDEHTAINMNLHYLENGTVMLNF
IFQKELFFLPLGFALKALAGFSDYQIFQELIKGRENNSFYKNCISQMLRMVMEEGCATQK
QVLNYIGKCFRVKLNLPEWYPNEQAAEFLLDQCICIHLKTKTEKFYLLCLMTRKLFAFAK
EECMEENPDSLMNQEVLTPGQLYLMFLKERMEAWLLSVKVALDKRSQKTNITINSENMMK
LFSMGIDVTRPFEYLLATGNLRSKTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAF
AKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHITTVCEIVTKSAYTLSLPPLLCSLG
VTPVDGTPSQPYAECYPVTLDGSLVGWVEKDMAPRIADTLRHFKVMQEKKIPAWTEVVLI
PMTGKPSLYPGLFIFTTPCRMVRPVRNLALGKEELIGTLEQVFMNIAVLEDEIVPGVTTH
QELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYKERSDNKLYRLQTPQ
SPLVRPSMYDYYDMDNYPIGTNAVVAVISYTGYDMEDAMIVSKASWERGFAHGSVYKTES
IDLAEKIKQGDDSLVFGVKPGDPRVIQNLDADGLPHIGSILQYGDPYYSYLNLSTGESFI
TYYKSKESCIVDNIKVCSNDSGNGKFKSVCITMRIPRNPTIGDKFASRHGQKGILSRLWP
VEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSA
LEYFGKMLKAAGYNHYGTERMYSGISGVELEADIFIGLVYYQRLRHMVSDKFQVRTTGAR
DKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLS
PLLEKPPPSWSTTRNRKCYCTVCNQSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcggcggcggcgaggtggcggggcctgcccgagcggcccagcctcgcgccc
ctgacggcgccgggctacgggcggccccgcgagaggcagcacccggccctgcaggagctg
acccgggcccacgtcgagtccttcaacctggccgtgggcgaggggctgcaccgggccgtg
caggctgttcctgctctggagtttgctttcaaaaatgaacgcatcactctggcagttgtg
ggcgctgtcatcagtcctcctatggtaccaaaagggagtatctgtaaagagctgaaagta
tacccagcagaatgtagaggacgcagaagcacctatcgtgggaaactgactgctgacatc
agctggtcagtgaatggcattcctaaagggattattaaacagtccctgggatatgttcca
atcatggtgaaatctaaactttgcaatttacatagtcttcctcccagagctctgattgaa
caccatgaggaagaagaggaaatgggaggctattttatagttaacggtatagaaaaagtt
atcagaatgctgattatgcctagacgaaacttccccattgcaatgataagacccaaatgg
aaaagccgaggccctggttacacagagtatggtatatcgatgcactgtgttagggatgag
cacactgctataaacatgaaccttcactacctggagaatggtacagtgatgctgaacttc
atttttcagaaagagttgttcttcctcccactgggatttgcactgaaggcattagctggt
ttctcagattaccagatttttcaagagttgatcaaaggaagagaaaacaactccttctat
aagaactgcatctctcagatgctgagaatggtaatggaggagggctgtgccacgcagaag
caggtccttaactacattgggaaatgcttccgagtgaaactcaaccttcctgagtggtac
ccaaatgagcaagctgcagaattccttttggatcagtgcatctgtatacacttgaaaacc
aaaactgagaagttctacttgctttgtctgatgacccggaagctgtttgcttttgccaaa
gaagagtgcatggaggagaatccagatagccttatgaatcaggaggtgcttaccccaggg
cagctttacctcatgttcttaaaggagaggatggaagcttggttgctttctgttaaagta
gccttggacaaaagatctcaaaagaccaatataaccataaattcagaaaatatgatgaag
ctattcagcatgggaattgatgttacaaggccatttgaatatctccttgctactggtaac
ctgcgctctaaaacaggtctgggtatgctacaagattctggtctgtgtgtggtggcagac
aagctgaattttattcgttacctgtcccattttcgctgcgtacacagaggtgctgcattt
gccaagatgagaaccaccacagtgcgcaaactgctgccagaatcctggggcttcctgtgc
cctgtgcacacccccgacggagagccctgtgggctgatgaaccatattacgactgtctgc
gaaatagtgacgaagtcagcctacaccttgtccctgccacctttgctctgctccttaggt
gtcactccagttgatgggactccaagccaaccctatgcagagtgttacccagttacactg
gatggctcgttagtgggctgggtagaaaaagatatggctcctaggattgcagatactctc
cggcactttaaggtaatgcaagaaaagaaaattccagcctggactgaggtagtccttatt
ccaatgacaggaaaacccagtctgtatccaggattattcatttttactaccccttgcagg
atggttcggcctgtgagaaatttggccttgggaaaggaagaattgatcggtactctggaa
caggtcttcatgaacattgctgtccttgaggatgaaattgtgcctggcgtgaccactcac
caggagctctttcctcatagcatgctgagtgtggtggccaacttcattccgttctctgat
cacaaccagagtcccagaaacatgtaccaatgccagatgggcaagcaaactatgggcttt
ccacttctgacttataaggaacgctcagataataaactgtaccgacttcagaccccgcaa
agccccttggtgcggccatccatgtatgattactatgacatggacaactatccaattggc
accaatgcagtcgttgctgtcatctcctacactggctatgacatggaagatgcaatgatt
gtaagtaaggcttcgtgggagagaggatttgcacatggcagcgtttacaagacggagagc
atagatcttgctgaaaaaatcaaacaaggagatgacagtctggtgtttggagtcaagcct
ggtgatccaagggttatacagaatctagacgctgacggactgccgcacattggatccata
ctgcagtatggggatccttactacagctacctgaacctcagtaccggggagagtttcata
acctattacaagagtaaggaaagttgcattgtggataacatcaaagtgtgcagcaatgac
agtggaaatggaaaatttaaaagtgtttgcatcactatgagaatccctcgtaatccaact
attggggacaaatttgccagccgacatggacagaagggtattttgagcagactctggcca
gttgaggacatgccatttacagagagtggaatggttcccgatattctcttcaatcctcat
ggctttccatcccgaatgaccattggaatgctgattgagagcatggcagggaagtctgca
gcgttgcatggcctctgccacgatgccacccccttcacgttttcagaggagaactctgcc
ttggaatactttggcaagatgttgaaggctgctggctataaccactatggaacggagagg
atgtacagcggaatcagtggggtggaactggaggcagatatctttatcggacttgtatac
taccaacgcctgcgccacatggtctcggacaagttccaagtgaggacgacaggagccaga
gataaagtcaccaaccagcccatcggtgggaggaatgtccagggcgggattcgctttgga
gagatggaacgcgatgccttgttggctcacggcacgtccttcttgctgcatgaccgtctc
ttcaactgttccgatcggtctgtggcccacgtctgtgtcaagtgtggcagtttgctttct
cctttgttggagaagcctccgccttcctggtccaccacgcgcaataggaaatgctactgt
actgtgtgcaatcagagcgacacaatcgacacggtttctgtgccttatgtcttccggtat
tttgtggctgagttggcagccatgaacataaaagtgaaactcgatgtgaactaa
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