Caretta caretta (Loggerhead turtle): 125633497
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Entry
125633497 CDS
T09292
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125633497 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125633497 (MSH2)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125633497 (MSH2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
125633497
NCBI-ProteinID:
XP_048698800
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Position
3:26974982..27073570
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AA seq
939 aa
AA seq
DB search
MAAAAPVSAGESLWPEGSGAEGGFVRAVLALPDKPDTTVRFFERGEHYTVHGGDALLAAR
ELFRTRGVIRLLAGGPGNQKLESVVLSKMNFESFLRDLLLVRQYRVEIYKNKAGSKSTKE
NDWYLAYKGSPGNLAQFEEILFGNNDMSTAIGVVGVKLYTADGQRIVGVGYVDTTLRKLG
VCEFPDNDQFSNLEALLVQIGPKECVLPGGETSGDMGKLRHIIQRGGIMITDRKKAEFTT
KDIVQDLNRLLKSKKEEQVTSATLPEIEKQVAISSLSAVIKYLELLLDESNFGQFELTSF
DLSQYMILDNAAVRALNLFQSSVENANSTQSLVGLLNKCKTPQGQRLVNQWIKQPLTDKN
RIEERLNLVEAFVVDTELRQCLQEELLRRFPDLNRLAKKFQRQVATLQDCYRMYQAINQL
PNVVQALEKHEGAHQMLLLAVFVMPLNDLNSDFSKFQEMIETTLDMNKVENHEFLVKASF
DPNLTELREKMNKLEESMQSLLKTAARELGLEAGKNIKLDSNSQLGHYFRITCREEKVLR
NNAKYKILDTQKNGVKFTNSKLSSFNEDYVRSREEYEEAQEAIVKEIINIASGYVEPIQT
MNDVIAQLDAVVSFAHVSNGAPVPYVRPVILEKGQGRILLKGSRHPCIEVQDDIAFIPND
VNFEKGKQMFHIITGPNMGGKSTYIRQAGVIVLMAQIGCFVPCDSAEVTIVDCILARVGA
GDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKI
CAFCMFATHFHELTALANQVPTVNNLHVTALTTDEMLTMLYRVKKGVCDQSFGIHVAELA
AFPKHVIESAKEKALELEEFQTIGKPEESEGEPAAKRCYREKEEGEKIIQEFLCKVKALP
LRDMSEEDIRTKLKQLKAEVLAKNNGFVNEIVSRTKVTP
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcgcctgtctccgcgggggagtcgctgtggccggagggctcgggcgcc
gagggcgggttcgtgcgcgcggtgctggcgctgcccgacaagcccgacaccaccgtgcgc
ttcttcgagcgcggcgagcactacacggtgcacggcggggacgcgctgctggccgcccgc
gagctcttccgcacccgcggcgtcatccggctgctggcggggggcccaggaaatcagaaa
ctcgagagtgttgtgcttagtaaaatgaactttgaatcttttctgagagatttacttctg
gttcgtcagtacagagttgaaatttacaagaacaaagcaggaagtaaatctaccaaagag
aatgactggtatttggcatacaagggttctccaggtaaccttgcccagtttgaggaaatt
ctctttggcaataatgacatgtcgactgccattggtgttgtgggtgttaagctatatact
gctgatggacaaagaatagttggagttgggtatgttgacactacgctcaggaagctgggt
gtctgtgagtttccagataacgatcagttctcaaaccttgaagctctgctggttcaaatt
ggacctaaggaatgtgtgctaccaggaggagagacttctggagatatgggaaaactgcga
cacatcattcaaagaggaggaatcatgattacagaccgaaaaaaggctgaattcacaaca
aaagatattgtgcaggatctcaaccgcttgctaaaatcaaaaaaggaagagcaagtgact
agtgcaacattaccagagatagaaaaacaggttgcgatttcatccttgtcggccgttatc
aagtatttagagctcttgttggatgaatctaactttggacaatttgaattgactagcttt
gacctcagtcaatatatgatactggataatgcagctgttcgagcccttaaccttttccag
agttctgttgaaaatgccaacagtacacaatcattggttgggttattaaataagtgcaaa
actcctcaaggacaaagactggttaatcagtggatcaaacagccacttacggacaagaac
agaatagaagaaaggttaaatttggttgaggcctttgtggtagacacagagctacggcag
tgccttcaagaagagcttctacgtcgttttccagatctcaaccggctagccaagaaattt
caaagacaagtagcaaccctgcaggactgttaccgaatgtatcaagctattaaccaacta
cctaatgttgtacaagcactggaaaaacatgaaggagcacaccagatgttgttgctggca
gtatttgtaatgcctctcaacgatctcaactctgacttctccaagtttcaggaaatgata
gaaacaactttagacatgaacaaggtggaaaatcatgaattccttgtgaaggcttctttt
gatcctaatctgacagagttgagagagaagatgaacaaactagaggagagcatgcagtct
cttctaaagactgcagccagagaactagggttggaagctggcaagaacatcaaactggac
tccaattcacagttaggacattacttccgaattacctgccgggaagaaaaagttctccgg
aacaacgcaaaatataagatcttagatacccagaagaatggtgtgaaattcacaaacagt
aaattgagctccttcaatgaagactacgtaagaagcagagaagagtatgaagaggctcag
gaagccattgttaaagaaatcattaatattgcttcaggatatgtagagccaatacagaca
atgaatgatgtgatagctcagttagatgctgtcgtcagttttgctcatgtatcaaatgga
gcacctgtgccgtacgtacgtccggtcattctggaaaagggacaaggaaggattctgttg
aaaggttccagacacccttgcattgaagttcaagatgacatagcattcatccccaatgat
gttaactttgagaagggcaagcagatgttccatattattactggccctaacatgggaggg
aaatcaacatacattcgccaggctggagtgatagttcttatggcccaaattgggtgcttt
gtaccatgtgactcagcagaagtgactattgtggattgtatcctggctcgggtaggagca
ggagacagtcagttgaaaggtgtctcaactttcatggcggaaatgttagaaactgcttca
attcttcggacagcatctgaaaattccttaataatcattgacgagttgggaagaggaact
tcaacatatgatggatttggattggcatgggctatttcagaatatatcgccagcaaaatt
tgtgccttttgtatgtttgccacacattttcatgaactgacagcacttgctaaccaagtg
ccaactgtgaataatttacatgttacagcactaaccactgatgagatgctgactatgctt
tatcgtgtcaagaaaggtgtatgtgatcagagttttggaatacatgtagcagagcttgct
gcttttccaaagcatgtaatagagagtgcaaaagagaaggctctggagctagaggagttc
caaactattggaaaacctgaggaatctgaaggagaaccagcagctaagagatgctacaga
gaaaaagaggaaggtgaaaaaataattcaggaattcctttgtaaagtgaaagcattgccc
ttgagagacatgtcagaggaagacatcagaaccaaactgaaacaattgaaagctgaagtg
ttggcaaagaacaacggttttgtgaatgaaattgtttcccgaacaaaagttactccatga
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