Caretta caretta (Loggerhead turtle): 125633916
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Entry
125633916 CDS
T09292
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125633916 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125633916 (TAF5L)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125633916 (TAF5L)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125633916 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
125633916 (TAF5L)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125633916 (TAF5L)
STAGA complex
125633916 (TAF5L)
TFTC complex
125633916 (TAF5L)
SAGA complex
125633916 (TAF5L)
SLIK complex
125633916 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_EIPR1
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_IP5PC_F
Ge1_WD40
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
125633916
NCBI-ProteinID:
XP_048699859
LinkDB
All DBs
Position
3:complement(77473186..77505215)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCMAEPQQYEVQFGRLRSFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTLTIQDILSNFKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYASGSSSRNESNGLETTDMPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISLDSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDIVDEEEEDDDNVGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPWSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSIRVWDIR
NTYCNAPADGSSSELVGVYTGQMNSVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgccgt
cagtacgtggactcagaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgtagtgtctgca
gctccctgcatggcagagccacagcaatatgaagtacagtttggacgattacgcagtttt
ctcacagattcagattcccagcacagccatgaagtgatgcctcttctgtatccccttttc
gtctacctccatcttaacatggtccaaaatggcctaaagagcacagtggacagtttctat
agtcgcttccatgggatgttcttgcagaatgccagccagaaggatatcattgagcagttg
cagactactctgacaattcaagacatcctgtccaacttcaagctccgggcatttctggac
aacaagtatgttatccgccttcaagaagacagctacaactaccttctccgctacctccaa
agtgacaacaacaatgctctttgcaaggttctcaccttgcacattcacctggatgtgcag
cctgccaagaggacggactaccagctatatgccagtggcagctcctcacgcaacgagagc
aatggcctggaaacgacagacatgcctgcttccatactgcagaatgaagcagcgctggat
ttacttcaggacagcattaaacgagtcaaggacgggcctccttcactaaccaccatatgt
ttctatgccttctataacacagagcagttgctgaacacagcagagatctcgctggatagc
aagctgcttgctgctgggtttgataattcttgtgtaaagctgtggagcttgcgatccagg
aagttaaaatctgagcctcatcttgtagacgtgtccagaatccgtctggcttgtgacatc
gtggatgaggaggaggaagatgatgacaatgtaggcacagaaatgaagatactgagagga
cattgtggaccggtgtatagcacaaggttcctatcagacagttcgggactcttatcttgt
tctgaggacatgtccatcagatactgggaccttggaagttttacaaacactgtgttgtac
caagggcatgcctaccctgtctgggatttggacataagtccttggagcctgtactttgcc
agtggttcccacgaccgcacagcaagactctggtcatttgatcggacatacccactgcga
atatatgcaggccacttagcagatgtggactgtgtcaagtttcaccccaattccaactac
ttggctacgggatccacagacaaaactgtgcgcttatggagtactcaacaggggaactct
gtgcgcctcttcacaggtcaccgtggccctgtgctagcacttgcattttctcccaatggt
aagtatctggcttcagcaggagaagaccagcggttaaagctgtgggacttggcatctggc
actctttacaaagaactgagggggcacacggacaatataaccagccttacttttagtccc
gacagcagtttgattgcctctgcatcaatggacaattctattcgggtttgggacattcgg
aacacatactgcaatgcccctgcagatggttcttccagtgaactggttggtgtatatact
ggacagatgaatagtgtactgagcgtacagtttatggcctgtaatcttcttctggtgact
ggaattgcacaagaaaatcaggaacattaa
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