Caretta caretta (Loggerhead turtle): 125634027
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Entry
125634027 CDS
T09292
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125634027 (SCAF8)
03041 Spliceosome [BR:
ccay03041
]
125634027 (SCAF8)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125634027 (SCAF8)
Spliceosome [BR:
ccay03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125634027 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
MCM
Motif
Other DBs
NCBI-GeneID:
125634027
NCBI-ProteinID:
XP_048700139
LinkDB
All DBs
Position
3:complement(90733708..90819539)
Genome browser
AA seq
1551 aa
AA seq
DB search
MTDPLLSGRWPQYSASRCRRRTPPKEQALSLERPERRSGHHLDGRCSARAGLVRARPPGA
ALAAASAALGSPELRCLEPVCPPYWCPRCLPLQLLRRVPPSRPGQAEPGKPTAQGGKRRE
AAERSREETATSGXPRPLRHPPWREGPADPERHQPPPRRPSPAAISGDEPPGPRLCLNME
AVKAFNSELYSLNEYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPG
LYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNV
FKSEIIQPLLDMAAGIPPPVLTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQ
IANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLT
AAAAAANTLNPLEQNVSFNKKLMDRFDFGEEPELSEEPKKETPTSQLPLVSESVNNSLFH
QLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVETN
LDDSMDIQQQDMDIDEGQDVVEEEIFEQEEKKSAVRSRSRTHSRSRSRSPRKRRSRSRSG
SRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWV
GQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGS
KIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLDGFAEGGMIDQETVNTEWET
VRSSEAVKENIQTTQSTTVDKNTAVTTQTEAYTQSVTMLQIPVAPAVPAVSLVPPAFPVT
MSVPPPGYSSIPPPPFLRASFNPSQPPPGFMPPPVPPVPPPVGPPPVVPQVVPTSLVQPP
LSITQETMKDVPFGSLVLPVGTVSSSLATPTLSAGSVFNPLPSNKPESEEKGSHLADVQI
SSSENNRSVQNDVSSSSGLAGGVQPPGVSSSSGRAGGVQPPGVSSSSGRAGGVQPPGVSS
SSALAGGVQPPGVSSSSALTGGVRPPGVSSSSTLAGGVQPPGVSSSCGLLAGVPPPNVSS
SSGLMAGVPPPNVSSSSGLMAGMPPPNVSSSSGLMAGMPPPNVSSSSGLLAGMPPPNVSS
SSGLLAGVPPPNVSSSSGLLIVPPPNVSSSSGLLGMQHPVGVQNIPHLNISSQRMPGMPL
LDLRPGLIPQSPGPRFPLIQPGMPPQRNIPPPTLLDPSLHPPPRGPFPPPGDLFNQTERP
FGTPGRQNVDSISNPEKRLPLGGDSIQQEGDRDYRFPPVENRETLNRPSPVDVRDSIGRP
PVDPREGLGRPPIDGREHFVRPHIDMRENFGRPGVDNIGRREHFGFNSEKHWGQRGDYDE
REHNVFPIYGGPKSFHEDRERFRHVNYRFETRSGPSWNRGFEQDAHRDFDDRRRPWERQR
DRDDRDFNFCREINGNRFGRDRMQNNWIPPPHPRVFEYFEGATSQRKADNIPQVNGENTE
TESQPPNVQVQNDPELYEKLASSSEINKEKSDTEADIESEPVVESTETEGT
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccctcttctttctggccgctggccgcagtactcagcctcccgctgcaggagg
cgcacacccccaaaagagcaagcgctctcgctagagcggccagagcgacgttctggacac
cacctcgatggtcgctgctctgcgagggccgggctggtgcgcgcgcgaccgccaggggcc
gctctggccgccgcctccgctgctctcggctcccccgagctgcgctgcctggagcccgtg
tgtccgccatattggtgcccgcgctgcctgcctctgcagctgctgcgccgtgtccctcca
tctcgtcccggccaggccgagcccgggaagccgacggcgcagggcgggaagcggcgcgag
gcggctgagcggagcagggaggagacggcaacgagcgggntcccgcggcccctgcgccac
ccgccatggcgagaaggcccggcggaccctgagagacaccagccccctccccggcggccc
agcccagccgccatcagcggagacgagccgcccggcccccgcctctgcctcaacatggag
gccgtgaaagcctttaacagcgagttgtactcgctaaatgaatacaaaccacctatttct
aaggctaaaatgacacagatcactaaggcagcaatcaaggctataaagttctacaaacac
gttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtgcctggt
ctctatgtcattgactctattgtgcgacagtcccggcatcagtttgggcaagagaaggat
gtgtttgctcctagattcagcaataatatcatcagcactttccagaatttataccgttgt
cctggggatgacaagagtaaaattgttagagtgctaaatttgtggcagaagaataatgta
ttcaagagtgaaattattcagcctctcctggatatggcagcaggaattcctcctccagtt
ttgactccagttttgcccagtacaacagctgctatgagcaacaatacaccaggaactcct
gtgacacctgttactccagccaatgtggtacaaagtttacctgatccttgggtgtctcaa
attgctaatacagacacacttgctgctgttgcacaaatcttacagagtccccaaggccaa
cagcttcagcagttaatacagacactgcaaatacaacaacagaagccacagccttcacta
cttcaagctctggatgctggtcttgtcgttcagttacaggccctcacagcacaacttaca
gctgcagctgcagctgccaacacacttaatccactggaacagaatgtctcttttaacaag
aagctgatggacaggtttgattttggggaagaacctgaactcagtgaagagcctaaaaag
gaaactcccacttcccaactgcctctagtatcagagtctgtgaacaactcactttttcat
cagctagctgaacaactgcaacaacaaaatttagaacacctccgacagcagctcctggag
caacagcagcctcaaaaggcaagccctgaggaaaatcaagagggaaattttggatcagag
cactctgcatcaccatcacaagggagtagccaacagcagtttttagaagtggaaacaaac
ctagatgattcaatggatattcaacaacaggatatggatatagatgaagggcaagatgta
gttgaggaagagatctttgaacaagaagaaaagaaatcagctgttcgttcaagatcaaga
acacactcgagatctcgttcaaggtcaccaagaaaacggaggtccaggtcacggtctggt
tcccgaaaacgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaagagaaaa
tcatctcggtcatactccagtgaaagaagagctagggaaagggaaaaagaacgccagaaa
aagggattgcctcctattcggtctaaaacactaagtgtctgcagtactactctttgggtt
ggtcaagtagacaagaaggccacacagcaagatttaactaatttgttcgaagaatttgga
caaatagaatctattaacatgattcctccaagaggttgtgcatatgtctgcatggttcat
agacaagatgcatatcgtgctcttcagaaacttagttctggatcctacaaaattggatct
aaaattattaagattgcttgggctttaaataaaggtgtgaaaacagagtacaagcaattt
tgggatgtggatcttggagtttcatatataccttgggaaaaagtaaaattggatgatctg
gatggctttgctgaaggaggcatgattgaccaggagactgtaaatacagaatgggaaact
gtgaggagctcagaggctgttaaagaaaatatccaaactactcagagtacaactgtcgat
aagaatacagctgttacaacacagacagaagcttatactcaatctgtaactatgctacag
attccggtagctccagctgtgcctgctgttagtttagttccaccagcatttcctgtcaca
atgtctgtcccacctcctggctatagttcaattccaccacctcccttcttgcgggcaagt
ttcaacccttcacaaccacctcctggttttatgcctcccccggttccaccagtcccacca
cctgttggtccaccacctgttgttccacaggtagtcccaacatctctagtgcagcctcct
ctttccattactcaagagacaatgaaagatgttccttttggtagccttgttttaccagtt
ggcactgtttctagcagtctagccactccaacattatcagcgggaagtgtttttaaccct
cttccaagcaacaaaccagagtcggaagaaaaaggatcacatcttgcagacgttcagatt
tcttccagtgaaaacaacagatctgttcaaaatgatgtctcaagcagctccgggcttgcg
ggaggagtacagccacctggtgtctcaagcagctccggtcgtgcgggaggagtgcagcca
cctggtgtctcaagcagctccggtcgtgcgggaggagtgcagccacccggtgtctcaagc
agctccgcacttgcaggaggagtgcagccacccggtgtctcaagcagctccgcgcttacg
ggaggagtgcgcccacctggtgtctcaagcagctccacacttgcgggaggagtgcagcca
cctggtgtctcaagcagctgtggacttttggcgggagtgccgccaccaaacgtctcaagc
agctctggacttatggcgggagtgccgccaccgaacgtctcaagcagctctggacttatg
gcgggaatgccgccaccgaacgtctcaagcagctctggacttatggcgggaatgccgcca
ccgaacgtctcaagcagctctggacttttggcgggaatgccgccaccgaacgtctcaagc
agctctgggcttttggcgggtgtgccgccacccaatgtctcaagcagctctgggcttcta
atagtgccaccacccaatgtctcaagtagttctggacttctggggatgcagcatccggtg
ggggttcaaaacataccccatttaaatattagtagtcaaaggatgcctggaatgcctctc
ttagatctccgtccaggactaataccccagtcacctggaccaagatttccattaatacag
cctggaatgccaccacagcgtaatatccctcctccaacactccttgacccatcccttcat
ccaccaccgagaggtccttttcctcctccaggagatctttttaaccaaacagagagacct
tttggaacacctggaagacaaaacgttgatagcatttctaatccagaaaaaaggttacca
cttggaggtgatagcattcaacaggaaggagaccgagactatcgctttccaccagtggaa
aacagagagactcttaataggccatccccagtcgatgtcagagattctattggacggcca
ccagtagatccaagagagggtctaggaagacctccaatagatggaagagaacattttgta
aggccacatatagatatgagagagaattttggaagaccaggtgtggataatattggtcga
agagagcattttggtttcaattcagaaaagcattggggacagagaggagattatgatgaa
agagaacacaatgtttttcctatctatggtggtcctaaaagcttccatgaagatagagag
aggtttcggcatgtaaattacagatttgaaactagaagtggtcccagctggaacagagga
tttgaacaagatgctcacagagattttgatgaccgtagaagaccctgggaaagacagagg
gatagggatgacagagattttaatttttgcagagaaataaatggaaacagatttggaaga
gacagaatgcagaacaactggatccctcctccacatccaagggtttttgaatattttgaa
ggggccacttcacagcgcaaagctgataatataccccaggtaaatggtgaaaatacagag
acagaaagtcagccaccaaatgtgcaagtgcagaacgatccagaactttatgaaaaacta
gcatcttcaagtgagataaacaaagagaagagtgacacagaagctgatatagaaagtgaa
ccagtggtagaaagcacagaaactgaggggacataa
DBGET
integrated database retrieval system
