Caretta caretta (Loggerhead turtle): 125634148
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Entry
125634148 CDS
T09292
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125634148 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125634148 (HBS1L)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125634148 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
125634148
NCBI-ProteinID:
XP_048700449
LinkDB
All DBs
Position
3:105178698..105306772
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AA seq
944 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDCCISPSTAAQFIYSRRDKPSAFAERLEEEYG
YEDVQEPAKNITSNHQLTGVDQARLYSCLDQMREVLGEAVPEQVMVEAVLNSKFDVQKAL
DLVLAQDSKQNVKTKNEEAVTTGKTTKGDLLYSETFTYLENLSYLIENTSANTSMSELSS
LTVKTKSPCYFSTLSDKTLFKAKHSNISSIEKKISESSHKSSGVLHSSLSNNMCEESCYE
SVNKRVAVRLPDNTSTVSLISSNEGKICFSVGAELLEASPSENPSWKQLECKESQDLKSL
MMQNITYDYLSLQDRGLLGVQNSSDHNSKGSMDSSPGLMSAVRKLALDNDINSTQNRKTE
LFENFPSFLQSTRQDISSSEMGNLPFSKSGGPSLADLLQEHQKRKPRDSQSTRIDSKIVP
KVTKMTVSGKKQAMGFEVPSVIAEENGHSANTPQKRPSSEDSSVTSGIVELVSKSALPSQ
TIQIPEEQSTVPTPVKKSSKTRQQIDVKAELEKRQEGKQLLNLVVIGHVDAGKSTLMGHL
LYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVI
TLMDAPGHKDFIPNMITGAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQ
LAVAVNKMDQVSWQQERFQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTSCRSSE
LTEWYKGKCLLEQIDSFKPPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRL
LAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLTGMDIIKINVGCIFCGLKEPIKACIR
FRARVLIFNIDVPITKGFPVLLHYQTVSEPATIRRLLSILHKSTGEVTKKKPKVLTKGQN
ALIELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcacaggaacgtccgaggctataactacgacgaagattttgaagatgatgat
ctttatggccaatcagtagaggatgattgttgtatttccccttcaacagctgctcagttt
atttactcaagacgtgacaaaccctcagcatttgctgagcgattagaagaagagtatggc
tatgaagatgtgcaagaacctgccaagaatattacatccaatcatcagctaactggagtt
gatcaagctcgtctttattcgtgccttgaccagatgagagaagtgctgggggaagctgta
ccagagcaggtgatggtggaagcagtgttgaatagtaaatttgatgtacagaaggctttg
gatcttgtgcttgcacaagacagtaagcaaaatgtgaagaccaagaatgaagaagctgtg
actacaggaaagacaacaaaaggagatttactttattcagaaacttttacttatttggag
aacttgtcttacttaatagaaaacacttcagcaaacaccagcatgtctgagctcagtagc
ctgacagtcaaaactaaatcaccttgttacttttcaactttaagtgacaaaacactcttc
aaagctaaacattctaatatatcctcaattgaaaagaaaatatctgaatcttctcataaa
tcttcaggagttctacattcttccctcagtaataatatgtgtgaagaatcatgttatgaa
tctgtcaataaacgtgtagcagtacgattaccagacaataccagcacagtgagtttgatt
tccagcaatgaaggcaaaatttgctttagtgtaggtgctgaattattggaagctagtcca
tctgaaaatccttcctggaagcagttggagtgcaaggaatcacaagacttgaaatctttg
atgatgcagaatataacttatgattatttaagtctccaagacaggggactacttggggtc
cagaattcttcagatcataatagtaaaggaagtatggatagtagtcctggcttaatgagt
gctgtacggaaactggcacttgataatgatataaactctactcagaatagaaagactgag
ctttttgaaaattttccttcatttctacaaagtaccaggcaagacatctcatcttcagaa
atgggtaatttgccattttcaaaatctggaggtccatcactggctgacctacttcaagag
caccagaaaagaaaaccaagagattcccagtcaaccagaatcgattctaaaattgtgccg
aaagttaccaaaatgactgtgtctggaaagaaacaagctatgggatttgaagtgccaagt
gtgattgctgaagagaatggtcatagtgctaatacacctcaaaaaagaccatcatctgaa
gattccagtgtcacttctggaatagttgagttggtctctaaatcagctcttccatcccaa
acaattcagattccagaagagcagagtacagtacctactccagtgaaaaagtccagcaag
acaagacaacaaatagatgtgaaagcagagctggagaagaggcaagaaggaaaacagctg
ctgaatttagtggtcataggacatgttgatgcaggtaaaagtactctaatgggtcattta
ctctaccttctgggcaacgtgaacaaacgaactatgcacaaatacgagcaggaatccaaa
aaggctggcaaagcttcatttgcgtatgcatgggtcttggatgaaactggggaagaaaga
gaaaggggagtaacaatggatgtgggtatgaccaaatttgagacaaagactaaagttatt
acactgatggatgctccaggacataaagatttcatcccaaatatgatcacaggagctgca
caggctgatgtggctattttggttgtggatgctagcaggggggagtttgaagcagggttc
gagactggtggacagactcgagaacatgggttattggttcgctctcttggagtaacacaa
ctggcagttgcagtcaataaaatggaccaggtcagttggcaacaggagagatttcaggaa
attaccagtaaacttggccagtttcttaaacaagctggctttaaggagtccgatgtagct
tatatccctacaagtggtcttggtggtgaaaatctagtcacaagctgtcgatcaagtgaa
ctcactgaatggtataagggaaaatgtttgttagaacaaattgattctttcaagccacca
cagagatcagtggataaaccatttagattatgcgtgtctgatgtttttaaagaccaagga
tcaggattttgtgtgactggtaaaatagaagcaggatatatacagactggagaccgactt
ctggctatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcatgatgaacca
gttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatggatatcatc
aaaatcaatgttggctgtatattttgtggtctcaaggaacccatcaaagcctgcattcgt
ttcagagctcgagtcctcatctttaatattgatgtccccattactaaaggattcccggta
cttttacactatcaaactgtaagtgagcctgccactattagacgattattgagtatcctt
cacaagagtactggcgaagtcacaaagaaaaaacctaaggtcctcactaaaggacagaat
gctttaatagaactacaaacacaaaggcctgttgccctggaattgtacaaagattttaaa
gaacttggaaggtttatgttacgctacagcggatccactatagctgcaggagttgtcaca
gagattaaagaatga
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