KEGG   Caretta caretta (Loggerhead turtle): 125634259
Entry
125634259         CDS       T09292                                 
Symbol
HDAC2
Name
(RefSeq) histone deacetylase 2 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03082  ATP-dependent chromatin remodeling
ccay03083  Polycomb repressive complex
ccay04110  Cell cycle
ccay04330  Notch signaling pathway
ccay04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125634259 (HDAC2)
   03083 Polycomb repressive complex
    125634259 (HDAC2)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    125634259 (HDAC2)
   04350 TGF-beta signaling pathway
    125634259 (HDAC2)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    125634259 (HDAC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccay03036]
    125634259 (HDAC2)
Enzymes [BR:ccay01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125634259 (HDAC2)
Chromosome and associated proteins [BR:ccay03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125634259 (HDAC2)
   HDAC complexes
    Sin3A-HDAC complex
     125634259 (HDAC2)
    BRAF-HDAC complex
     125634259 (HDAC2)
    REST complex
     125634259 (HDAC2)
    SHIP complex
     125634259 (HDAC2)
    MiDAC complex
     125634259 (HDAC2)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125634259 (HDAC2)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125634259 (HDAC2)
  Chromatin remodeling factors
   NuRD complex
    125634259 (HDAC2)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 125634259
NCBI-ProteinID: XP_048700713
LinkDB
Position
3:120546773..120610142
AA seq 488 aa
MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDSSGEKTDTKGA
KSELLSNP
NT seq 1467 nt   +upstreamnt  +downstreamnt
atggcgtacagtcagggcggcggcaagaagaaagtctgttattactatgacggtgatatt
ggaaactattattatgggcagggccatcccatgaaaccccataggatccgtatgactcac
aacttgttgctaaattatggcttgtacagaaaaatggaaatttatcgaccccataaagct
acagctgaagaaatgaccaagtaccacagtgacgaatacatcaaatttcttcgatcaata
aggccagacaatatgtctgaatatagcaagcagatgcagagatttaatgttggagaagat
tgtcctgtgtttgatggactgtttgagttctgccagctgtcaacaggaggctctgttgct
ggggcagtaaaattaaatagacaacagactgacatggctgttaattgggctggaggactc
catcatgctaagaagtcagaggcatctggtttctgttacgtcaatgatattgtgcttgct
atcctagagctgctgaaatatcaccaaagagtgttatacattgacattgatatccatcat
ggtgatggtgttgaagaagcattttatacaacggaccgtgtcatgacagtatcattccat
aaatatggtgaatattttcctggcacaggggacttaagggacattggagctgggaaaggc
aaatactatgcagttaattttccaatgagagatggtatagatgatgaatcatatgggcag
atattcaagccaatcatatccaaagtgatggagatgtaccagcccagtgccgtggtattg
cagtgtggagcagattcattatctggtgacaggttggggtgttttaatcttactgtcaaa
ggtcatgctaaatgtgtggaggttgtaaaaacttttaacttgccgctgctgatgctagga
ggaggaggatatactattcgtaatgttgctcgatgttggacatatgagactgctgttgcc
ttagactgtgaaattcctaatgagttgccatacaatgactactttgagtattttggacca
gacttcaaactgcatattagtccatcaaatatgacaaaccagaacacaccagagtatatg
gaaaagatcaaacagcgtttatttgagaacttgcgtatgttgcctcatgcacctggagta
cagatgcaagccattcctgaggatgctgttcatgaagacagtggagatgaggatggagaa
gatccagacaaacgcatttctattcgagcgtctgataagcggatagcctgtgatgaagaa
ttctctgattctgaggatgaaggggagggtggacgacgaaatgttgcagatcataagaaa
ggagcaaagaaagccagaatagaagaagacaagaaagagactgaggacaaaaaaactgat
gttaaggaggaagataaatccaaggacagtagcggtgaaaagacagacaccaaaggagcg
aaatcagaactgctcagcaatccttga

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