Caretta caretta (Loggerhead turtle): 125634583
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Entry
125634583 CDS
T09292
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125634583 (DDX1)
03016 Transfer RNA biogenesis [BR:
ccay03016
]
125634583 (DDX1)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125634583 (DDX1)
Spliceosome [BR:
ccay03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125634583 (DDX1)
Transfer RNA biogenesis [BR:
ccay03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125634583 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
125634583
NCBI-ProteinID:
XP_048701498
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All DBs
Position
3:174084220..174118710
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRTTKGVTKGKYYYEVSCHDQGLCRTGWATMQASLDLGTDKFGFGYGGTGKKSHNKQFD
SYGEEFTMHDTVGCYLDIDKGQIKFSKNGKDLGIAFEIPPHIKSQALFAACVLKNAELKF
NFGEEDFKFPPKDGFIALCKAPDGNVLKSQHAGNAQVAQTKNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSILENGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHGQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDKQWERLGKNHIRTDEVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFMQQGGGPDRKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLG
EIEEHLNCTISQVEPDIKVPVDDFDGKVTYGQRRAAGGGTYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRMF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttctctgagatgggtgttatgccagagatagctcaagctgtggaggagatg
gactggcttcttcccacagatattcaagctgagtctatcccgttgattctaggaggtggt
gatgtgcttatggctgcagaaactgggagtggaaagactggtgctttcagcatcccagtt
atccagattgtttatgaaacccttaaggaccagcaggaaggcaaaaaggggaaaactact
atcaaaactggtggggcagtactcaacaaatggcagatgaacccatacgatagaggatca
gcttttgcaattggatcagatggtctgtgttgccaaagcagggagataaaggaatggcat
ggatgcagaacaactaaaggagtgactaaaggaaaatattattatgaagtatcctgtcat
gaccagggcttgtgcagaactgggtgggccactatgcaggcttcattggatttgggcact
gacaaatttggctttggctatggtggaactggaaagaagtcacataacaaacagtttgac
agttatggtgaggaattcactatgcatgatacagttgggtgctatctggatatagacaag
gggcaaataaagttctccaaaaatgggaaagaccttggcattgcatttgaaatcccacca
catataaagagccaagcactctttgcagcctgtgttctgaagaatgctgaattgaaattc
aattttggtgaagaagactttaagtttccaccaaaggatggatttattgctctttgcaaa
gctcctgatggaaatgttctgaaatcgcagcacgcaggaaatgcacaagtggctcaaaca
aagaaccttcctaatgctccaaaagcattaattgtggaaccatccagagagttagcagaa
caaactttgaacaacgtaaaacaattcaagaaatacgttgataatcctaaattaagggaa
ctcctaattattggtggtgttgctgcaagagatcaactttctattctggaaaatggtgtg
gacatagttgtgggaacccctggaaggttggatgacttggtgtcaactggaaagcttaac
ttatctcaagttagattcctggttcttgatgaagctgatggccttcttctccaaggttat
tcagacttcataaacagaatccacggtcaaattcctcagataacttcagatggaaaaaga
ctgcaggttattgtgtgttctgcaactctacattcttttgatgtgaagaaactatctgag
aagatcatgcatttccccacttgggttgacttaaaaggagaggattctgtcccagaaact
gtgcaccatgttgttgttcctgtgaatcctaaaaatgacaaacaatgggaaaggcttggc
aagaatcatatcaggactgatgaggtacatgcaaaagataatacaaggcctggtgctaac
agtccagaaatgtggtctgaagctattaaaatactgaagggagaatacgctgttcgagca
attaaggaacacaagatggatcaagcaattattttctgcagaactaaaatagactgtgat
aacatggagcagtactttatgcaacaaggaggaggcccagataggaaaggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcatgaaagaaaacaaaatttggaaaga
tttaagaagggagatgtcagattcttgatctgcaccgatgtagctgctagaggaattgat
atccgtggtgttccttatgttatcaatgtcacactccctgatgaaaagcaaaactacgtt
catcgaattgggagagtaggcagagctgaaagaatgggtttggcgatttccctcgtggca
acagaaaaagagaaggtgtggtatcacgtttgtagtagccgtggaaagggttgctataat
accaggctgaaggaagatggaggttgcactatatggtacaatgagatgcagttgctgggt
gagattgaagagcacctgaattgtactatttcccaagttgagccagatataaaagtacca
gtggatgacttcgatgggaaagttacatatggacaaagaagggctgcaggcggtggaacc
tataaaggccatgtggatattttggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttacatcttggctaccttcctaaccagctgttcagaatgttt
tga
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