Caretta caretta (Loggerhead turtle): 125634701
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Entry
125634701 CDS
T09292
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay00100
Steroid biosynthesis
ccay01100
Metabolic pathways
Module
ccay_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
125634701
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ccay01006
]
125634701
Enzymes [BR:
ccay01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
125634701
Prenyltransferases [BR:
ccay01006
]
Terpene biosynthesis
Squalene/phytoene synthase
125634701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
Motif
Other DBs
NCBI-GeneID:
125634701
NCBI-ProteinID:
XP_048701728
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All DBs
Position
3:complement(189907261..189930983)
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AA seq
459 aa
AA seq
DB search
MAASTKAVALFKRTLALSPPRCPGGGGQRCSSSPLSRPGGRRRGGSRLLHQGSPPGACPA
SPRFQQPVSPLLCPQDVLSDGLKTCYRYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRA
LDTVEDDMTISLETKVPMLHDFHSYLYQPDWRYMESKEKDKQVLEDFTTISLEFRNLAEV
YRDVIADICHKMGAGMAEFLEKKVDTQHEWDKYCHYVAGLVGIGLSRLFSASELEDPVVG
QDTELANSMGLFLQKTNIIRDYLEDQLEGREFWPREVWSRYAKKLSDLTKPEHIDMAVQC
MNELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIATLAACYNNKQVFRGVVKIRK
GQAVTLMMDATNIQAVKAIMYQYVEEIYQKVPSTDPSSNKTQQIIVSIRTMSLPNGVEVS
RNHYSPIYLSCAMLLAALSWQYLSAMSKASEEYVQASEN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcaccaaggccgtggccctcttcaagcggaccctggcgctgtctcccccg
cgctgccccggcggcggcggccagcgctgctcgtcctcgccgctgtcccggccggggggc
cggcgccgcgggggcagccggctcctgcaccagggctccccgccgggggcctgcccggcc
tcgccccgcttccagcagcccgtgtcccctctgctctgcccgcaggacgtgctcagcgac
ggcctcaagacctgctaccggtacctgaaccagaccagccggagcttcgccgccgtcatc
caggccctggacggggagctgcgtcatgctgtgtgcatattctatctggttctccgagct
ctggacacagtagaagatgatatgaccatcagcttagaaaccaaggtcccaatgttgcat
gacttccactcctatctgtatcagccggactggagatacatggagagcaaggagaaggac
aagcaggtgcttgaggacttcacaacgatctccttggagttcagaaacctggcagaggtg
tatcgagatgtgattgcagatatttgtcacaagatgggagccggaatggcagagttcttg
gaaaagaaggttgacacccagcatgagtgggataagtattgtcactatgttgctgggctg
gtggggattggcctttcccgtctgttctctgcatcagagctagaagaccctgtcgtagga
caggacacagagcttgcaaattccatgggcctctttcttcagaaaaccaacatcattcgt
gattatctggaggaccagctggagggaagagaattctggcccagagaggtttggagcagg
tatgccaagaagctgtcggatctcaccaagccagagcacattgacatggccgtccagtgt
atgaatgaactgatcacaaatgcattgcaccatgtccctgatgttctcacctacttatct
agactgaaaaaccaaagtgtcttcaacttctgtgctattccacaggtgatggccatcgcc
actctggcggcctgttacaataacaaacaggtgtttaggggggtggtgaagattcggaaa
ggacaagctgtcactttaatgatggatgccacaaacatacaagctgtcaaggctataatg
taccagtatgtggaagagatctatcagaaggtcccaagcacagacccttcttctaacaag
acccagcagatcatcgtctcaatccggacaatgagtttgcccaatggcgtcgaggtatcc
cgtaaccattactcccccatatacctctcgtgcgccatgcttctggcagcgctgagctgg
cagtatctgagtgcgatgtcgaaggcatcagaggagtatgtacaagccagcgagaactga
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