Caretta caretta (Loggerhead turtle): 125634763
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Entry
125634763 CDS
T09292
Symbol
COL12A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XII) chain
KO
K08132
collagen type XII alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ccay00535
]
125634763 (COL12A1)
Proteoglycans [BR:
ccay00535
]
Extracellular matrix (ECM) proteoglycans
Others
125634763 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
DUF4998
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
125634763
NCBI-ProteinID:
XP_048701867
EnsemblRapid:
ENSCECG00000017683
LinkDB
All DBs
Position
3:197041510..197174733
Genome browser
AA seq
3307 aa
AA seq
DB search
MKIRLSSAIAALCAALLLSSIEAEVNPPSDLNFTMIDEHTVRMSWTRPPDAIEGYRVTVV
PTTDGPTKEFTLAPSTTHTILSDLTPDTEYVVTIASYDDREESLPVFGQLTIQTGVPVSP
EDKKPDQIQIQKCSVSALTDLVFLVDGSWSVGRSNFRYILDFIGTLVSAFDIGEEKTRIG
VVQYSTDTRTEFSLNQYFRRNDLLNAIKRIPYKGGNTMTGEAIDYLIRNAFTESAGARKG
TPKIAIIITDGKSQDEVEIPARELRNLGVEVFSLGVKAADAKELKLMASQPSLKHVFNVA
NFDGIVDIQNEIISQVCSGVDEQLGELISGEEAVEPPSNLVAAQISSKSIRVTWDPSASQ
ITGYRVQFFPMIAGAKQHVLSVGPQTTALNVRDLSPETEYQINVYAMKGLAPSEPITIME
KTQPVKVQVECSRGVDVKADIVLLVDGSYSIGIANFVKVRAFLEVLVKSFEVSPQKVQIS
LVQYSRDPYTEFYLNRYNKIEDVIQAINTFPYRGGSTNTGKAMTYVREKVFVINRGSRPN
VPRVMILITDGKSSDAFKEPAIKLRESDVEIFAVGVKDAVRTELEAIASLPAETHVYTVE
DFDAFQRISFELTQSVCLRIEQELAAIRKKSYLPARNLAFSEVKSNSFKVNWSPAGPEVL
SYLIKYKVAAGGEEFLVSVPASSTSSVLTHLLPETPYAVSVIAEYEDGDGPSLDGEETTL
EVIGAPRNLMITDETTDSFKVGWTPAPGNVLRYRVAYRPVTGRERKQVTVPANERSTTLL
NLTPDTRYEVYVIPEYLSGPGNSLNGYAKTEEVLGTPRNLRVSDATTSTMKLSWGAAPGK
VQRYLLTYTPVAGGETKEVTIRGDTTTTVLRDLEQGTRYALSVTALYASGAGDALPGQGE
TLEARGSPRNLRVSDATTSTMKLSWSAAPGKVQQYRITYAPVAGGEAKEVTIRGDTTTTV
LRDLEQGTRYALSVTALYASGAGDALPGQGETLEARGSPRNLRVSDTTTSTMKLSWSAAP
GKVQRYRITYTPAAGGEAKEVTIRGDTTTTVLRDLEQGTRYALSVTALYASGEGDALPGQ
GETLEDRGSPRDLVIRDITDTTVGLSWTAAPGAVRRYRIVWKSLYDGQTGESTVPGNVIN
TVLENLQPETKYKISVFASYSSGDGAPLEGEATTEVSPNARRVRVNEETENSMRVTWQPA
PGKVVSYRVVYRPVSGGRQVVAKVPATSTTTVLKRLQPLTKYNISIIPMYKSGEGKHRQG
EGTTASPYKPPRNLKTSDSTMSSFRVTWEPAPGEVRGYKITFHPTGEDRLGELIVGPYDN
TVVLEELRAGTTYKVNVFGMFEGGESAPLVGQEMTTLSDATVMPFLSGGLECITRAEADI
VLLVDGSWSIGRPNFKTVRNFIARIVEVFDIGPDKVQIALAQYSGDPRTEWHLNTYGSKQ
SLLDAVANLPYKGGNTLTGMALSFILKDNFKPEVGLRPRAHKIGVLITDGKSQDDIVAPS
KRLRDEGVELYAIGIKNADENELKQIATDPDDTHVYNVADFSFLVNIVDDLTINLCNSVK
GPGSLSPPSNLVTSEVTPRSFRVTWTAPVDSVDRYRVEYYPVSGGPPQQFYVNRAETTTV
LRNLKPETEYVVKVFSVVEDESSEPLSGTETTVPIPTVRNLNAYDIGSTSMRVRWEPLRG
ATGYRLLYEPLNATIPAVEKEMQVGSSVNDVQLVDLIPNTAYTLTIHAEFGDLSGDPLTT
QEVTLPLAGAKSLRVRDITHSSMNVIWDPAPGKVRKYLLRYKTTLGDEPKEVEVDKSKTS
TVLSSLLSQTPYDIQLVAVYDEGESIPVAAKATTLPVPAPVNLRLTEVTKQSFRGTWDHG
APDVALYRITWGPYGGTEKQETILNGDENTLVFENLNPDTLYDVSVTAIYPDESESDDLI
GSERTLPAIRPTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQRYRITYQRTTGDGAE
QSTMVGGRQNSVVLQKLQPDTPYTITVSSMYVDGEGGRMTGRGKTKPLNTVKNLRVYDPT
TSTLSVRWDHAEGSPRQYKVYYVPTTGGAEEMTTVPGNTNYIILRSLQPDTPYKITVVPA
YPEGDGGRVSDIGRTLVRGAARNIQVYNPTPNTLNVRWEPAPGPVQQYRVVYAPLVGPRP
SESIVVPANTHNVVLERLTPDTPYSVNVVALYADGEGNQSSGQGRTIPRSGPRNLKVFGP
TTNSLSVQWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQSDTPYKITVV
AVYDDGDGGQLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKLAYKPVGSD
EPPMEVFVGEVTSYTLHNLSPSTIYDVNVYAQYDSGLSAPLIDQGTTLYLNVTDLTSYKV
GWDTFCIRWSPHRSASSYRLKLNPADGSRGQEITVRGTETSHCFTGLSPDTEYNATVFVQ
TPNLEGPPISLKERTVVKPTEAPTQPPPPPPPPTIPPARDVCKGAKADIVFLTDASWSIG
DDNFNKVVKFVFNTVGAFDLINPAGIQVSFVQYSDDAKSEFKLNTYEDKAQALGALQNIR
YKGGNTRTGKALTFIKEKVLTWESGMRRGVPKVLVVVTDGRSQDEVKKAAAIIQHSGFSV
FVVGVADVDYHELSKIASKPSERHVFIVDDFDAFEKIEENLLTFICETATSTCPLIYLEG
YTSPGFKMLESYNLTEKHFASVQGISLESGSFPSHVAYRLHRNAFISQPASELHPDGLPR
AYTIILLFRLLSETPNEPFAIWQITDRDFKPQVGVILDPSTKLLSFFNKDTRGEVQTVTF
DDNEVKKIFYGSFHKVHIVVTSTSVKIYIDCSEVMEKPIKEAGNITTDGFEILGKLLKGD
RKSATFEIQSFDIVCNAVWTSRDRCCDLPSMRDEAKCPALPNACTCTQDSVGAPGPPGPA
GGPGTKGPRGERGLTGPAGPPGLPGEAGPPGPQGPPGPQGINGLSIPGEPGRQGMKGDAG
EPGLPGRSGTPGLSGPPGPVGPPGDRGFTGKDGATGPRGPPGSVGAPGVPGVAGPSGKPG
KPGDRGPQGPPGMKGEKGDRGDIASQNMMRAVARQVCEQLINGQMNRFNHMLNQIPNDYY
ANRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGDQGPPGERGLSGEKGERGIGSQG
PRGLPGPPGPPGESRTGPPGSTGSRGPPGPPGRPGNGGIRGPPGPPGYCDSSQCASIAYN
GQGFPESYVPESGPYQPESEPYIVPMESERREDEYEDYEVEMHSPDYPEQMCWKISLPRK
AKAKTKP
NT seq
9924 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaggctgtcttcagcaattgctgctctgtgcgcagctctcctcctgtcttcg
atagaggctgaagttaatccaccgtcagacttgaattttacaatgatagatgaacacact
gttcgaatgtcatggacaagaccacctgatgcaatagaggggtacagggtaacagtggtc
cctacaactgatggacctactaaagaatttacccttgcacctagtactacccatactata
ctgtcagatcttacacctgatacagaatatgttgtgacaatagcttcatatgatgacaga
gaagagagtctacctgtctttggccagcttacaattcagacaggtgttccagttagtcca
gaggacaagaagcctgaccagattcagattcaaaaatgttccgtcagtgcactgacagat
ttagtttttcttgtggatggctcgtggagtgtggggagaagtaacttcagatatattttg
gacttcatcggcactcttgtatcggcttttgacattggggaagaaaagacacgaattgga
gttgttcagtacagtactgatacaagaactgagttcagcttaaatcagtatttcagaagg
aatgatcttcttaatgcaattaaaagaataccttacaaaggtggcaatacaatgacaggt
gaagctattgattatctgattaggaatgcattcactgaatctgctggagcaagaaaaggc
actcctaaaatagcaatcatcattaccgacggaaaatctcaagatgaagttgaaattcct
gcaagagagcttcgcaacctaggagttgaagtcttctccttgggagtcaaagcagcagat
gcaaaagaactgaaactaatggcatctcagccatccttgaagcatgtttttaacgtggca
aattttgacggaatagtggatatacagaatgaaataatctcacaagtgtgctcaggtgtt
gatgaacagctgggtgaattgattagtggagaagaagctgtggagcctccttcaaaccta
gtggctgcccaaatctcatcaaaatcgattagagtcacttgggatccatcagctagccaa
ataacaggctacagggtgcaattctttccaatgatagcaggagccaaacagcacgtgttg
agtgttggtcctcaaactactgctttaaatgtccgagatctttctccagaaacagagtac
cagattaatgtatatgcaatgaaaggattggcacccagtgagccaattacgataatggaa
aaaacacagccagtcaaagttcaagtggaatgctcccgtggtgtggatgtaaaagctgat
attgtgcttttagtggatggctcctacagcattggtatcgccaattttgttaaagtaaga
gcctttttggaagtgttagttaaaagctttgaggtttcacctcaaaaagtacaaataagt
cttgtccagtacagcagggatccctatacggagttttatttgaacagatacaacaaaatt
gaagatgtaattcaggctattaacaccttcccctacagaggtggatctacaaacacaggc
aaagcgatgacctatgtgagggagaaagtatttgttatcaacagaggatcaagaccaaat
gtaccaagggtcatgattcttattactgatggaaaatcgtcagatgcctttaaagagcca
gccataaaattgagggagtcagatgtagagatatttgcagttggtgttaaggatgcagta
cgtacagaattggaagcaattgcttcactgcctgctgaaacccatgtgtacacagtggaa
gattttgatgctttccaaagaatatcatttgaacttacacagtctgtctgcctacgaatt
gagcaggaactggctgctataaggaagaaaagttatttacctgcccgtaatttggccttt
tctgaggtaaagtccaacagtttcaaagtgaattggtctccagctggacctgaggttttg
tcctatcttattaaatataaagtagctgctggtggagaagaattccttgtttcagtgccg
gcttcaagtactagctcagttctcacccatttacttcctgaaactccttatgcagtgagt
gtgattgcagagtatgaagatggtgatggtccttccttggatggggaagaaacgacttta
gaagttataggggctcctcgaaacttaatgataacagatgaaactactgatagctttaag
gttggctggacgccagctccaggaaatgttctaaggtatagggttgcatacaggccagtg
actggaagagagaggaaacaagtaactgtcccagcaaatgaaagatcaactacgttactg
aacttgactcctgatacaagatatgaagtttatgttattcctgagtatctgtctgggcct
ggaaattcattgaatggatatgcaaaaactgaagaagtcctagggactccaagaaatttg
agagtttctgatgctactacatccacaatgaagttatcttggggtgcagcacctggcaaa
gtccagcgataccttctaacatatactccagtggccggaggtgaaaccaaggaggtaacc
ataaggggtgatacgaccactactgtgctgagagatttagaacagggcaccagatacgca
ctgtctgtgactgccttgtatgcatctggagcaggggatgccctccctgggcaaggagaa
acacttgaagcccgaggaagtccaagaaatttgagagtttctgatgctacaacatccaca
atgaagttatcttggagtgcagcacctggcaaagtccagcaataccgtataacgtatgct
ccagtggctggaggtgaagccaaggaggtaaccataaggggtgatacgaccactactgtg
ctgagagatttagaacagggcaccagatatgcgctgtccgtgactgccttgtatgcgtct
ggagcaggggatgccctccctgggcaaggagaaacacttgaagcccgagggagtccaaga
aatttgagagtttctgatactacaacatccacaatgaagttatcttggagtgcagcacct
ggcaaagtccagcggtaccgtataacatatactccagcggctggaggtgaagccaaggag
gtaaccataaggggtgatactaccactactgtgctgagagatttagaacagggcaccaga
tacgcactgtccgtgactgccttgtatgcgtctggagaaggggacgccctccctgggcaa
ggagaaacacttgaagaccgtggctcacctcgtgatttggttattagagacataactgac
actacagtgggactatcttggacagcagctccaggagcagttcgtcgttatagaatagta
tggaaatcgctctatgatggtcagactggggagagcacagttcctggaaatgtaataaat
actgtgctggaaaatttacagccagagactaaatataagatttcagtcttcgcttcctat
agcagtggagacggagctcctctagaaggagaggctactactgaagtgtcaccaaatgcc
aggagggtgagagtaaacgaagagacagagaattcaatgagagttacatggcagcctgca
cctgggaaagttgtgagctatcgtgtagtttaccgaccagtcagtggaggaaggcaggtg
gttgcaaaagtaccagctacttccacaactacagtgttaaaacgacttcagcctttaact
aaatacaacatctctattattccaatgtataaatctggggaaggaaaacacaggcaagga
gaaggaacaacagcctctccatataaaccaccccgaaacctgaaaacgtctgattccact
atgtcaagtttcagagtaacttgggagccagcccctggggaagtgagaggttacaaaata
actttccatccgacaggagaagatagacttggagaactaatcgttgggccatatgacaat
acagttgtattggaagagcttagggcaggcactacctataaggtaaatgtttttgggatg
tttgaaggaggggagagtgcaccactggttggccaagaaatgaccaccctttcagatgct
actgtgatgccattcttatccggaggcttggagtgtattaccagagcagaagctgatatt
gtgttgctggtggatggttcatggagtatcgggagaccaaattttaaaacagtcaggaac
ttcattgctcgtattgttgaagtctttgatattggtcctgacaaagtgcagattgctctt
gctcagtatagtggagaccccagaacagaatggcacctaaatacttacggttccaaacag
agtttactagatgcggtggccaacttaccatacaaaggaggcaatactctaacaggaatg
gctttgagtttcatcctaaaagacaatttcaaaccagaagtcggattgaggcctagagct
cacaaaatcggtgttctcatcactgatggcaaatcacaagacgatatagtggctccttca
aagagactcagggatgagggagtggaactttatgcgattggtattaaaaatgcggatgaa
aatgagttgaagcagattgcaacagatccagatgatacccatgtttacaacgttgctgat
ttctccttcctcgttaatattgttgatgacttaacgattaatctgtgtaatagtgtaaaa
ggcccaggtagtttgtcgcctccctccaatctggtgacttctgaggtgacacctcgttct
ttcagagtgacatggactgcacccgttgacagcgttgatagatacagggttgaatactac
cctgtttctggaggcccacctcagcagttttatgtaaatagagcggaaactactacagtt
ctgagaaacctgaaacctgaaacagaatatgttgttaaagtgttctctgtggtagaagat
gaaagcagtgaacctctaagtggcacagaaacaactgtgccaatccctacagtcagaaac
ctgaatgcttatgacattggctcgacttccatgagagtgagatgggaacctctcagggga
gctactggttatcggttattgtatgaacctctcaatgccacaataccagctgtagaaaaa
gagatgcaagttgggtcatcagtaaatgatgttcagctggtagacctcatccccaatact
gcctacactttaactattcatgcagagttcggcgatctcagcggtgacccactcaccact
caggaagtgacattacctttagctggagccaaaagcttgagggttagagacattactcac
agcagcatgaatgtcatttgggatcctgccccaggaaaagtccgcaaatacctattgaga
tacaaaacaactttgggagacgaaccaaaagaggtggaagttgataaatcaaaaacgagc
acagtcctttctagtcttctctcacaaactccgtatgatatacaactcgttgcagtatat
gatgaaggagaatctatcccagtagctgctaaagctaccactttgcctgtaccagcacca
gtcaatctcagactcacagaagtaacaaagcaaagtttcagaggcacttgggaccatgga
gctccagatgtggctctctatagaatcacctggggaccctatggtggaacagaaaagcag
gagaccatcctaaatggcgatgaaaatactctggttttcgaaaatctgaacccagacacc
ctatatgatgtctcagttactgccatctatcctgatgaatccgaaagtgatgacttgatt
ggcagtgagcggacattacctgcaatacgtccaacaacacaagcaccaaagagcggccca
cgaaaccttcaggtgtacaatgcgacttccaatagcctgactgtaaagtgggatccagcc
agtggccgagtgcagagatacaggatcacttaccagcgtacaactggggatggcgctgaa
caatcgaccatggtaggagggaggcagaacagtgtcgtactacagaagctgcaacccgac
acgccatacactattactgtatcgtctatgtatgtggatggggaaggaggacggatgaca
ggcaggggcaagaccaagccactcaacacagtaaagaacctccgggtgtatgatccaacc
accagcacgctgagtgtacgatgggatcatgctgaaggaagtcctcgccagtataaagta
tattatgtgccaacaacaggtggtgcagaggaaatgacaacagtaccagggaacacaaat
tatatcatcctgagatctctccagcctgacacaccttacaaaataactgtggttccagct
tacccggaaggggatggtggacgtgtatctgacattgggagaactttggtgagaggagcg
gcaagaaacatacaagtttacaaccctacaccgaacaccctgaatgtccgatgggaacct
gcaccgggtccagtacaacagtatagagttgtctacgctccgctggttggcccaaggcca
tcagagtctattgtggttccagcaaacactcacaatgttgtgctggagcgcctgacccct
gacactccttactctgtgaacgttgtggctctgtatgccgatggagagggaaatcaaagc
tctgggcaagggagaacaatacctcgcagtgggccaaggaacttgaaggtgtttggtcca
acaacaaacagcctgtctgtacaatgggaccatgctgatgggccagttcagcagtacaga
atcatttattcacccactgttggagatcccatagatgaatatacaacagtacctggaaga
agaaataatgtgatattacagccactgcagtcagacacaccatataaaattactgttgtg
gctgtgtatgatgatggagacggtggacagctgacaggaaatggacgaactgttgggttg
cttcctcctcaaaacatacatatttcagatgagtggtatacacgattcagagtttcctgg
gatccctccccatctcctgttcttgggtacaaacttgcatataaacctgtaggttccgac
gagccgccaatggaggtgtttgttggggaagtgacttcatacacattgcacaacctgtct
cctagtactatctatgatgtgaatgtttatgcccaatacgattctggactcagcgcaccc
ctgattgatcaaggcactacattgtacttgaatgtcactgatctaacaagttacaaggtg
ggatgggataccttctgtatccgatggtcccctcaccggtcagcatcttcctacagatta
aagctcaacccagctgatggatcccgaggacaagaaattacagtacgtgggacagaaacc
agccactgtttcactggcctttcaccagacactgaatacaatgctactgtctttgttcag
accccaaaccttgagggaccgcccatctctctgaaagagcgcacggtcgtcaaacctacc
gaagcaccaactcaaccgcctcctcctcctccacctcccacaatcccaccggctcgggat
gtatgcaaaggcgccaaagcagacattgtgttcctgactgatgcttcctggagtattggt
gatgataatttcaacaaagtagtgaaatttgtttttaatactgttggagcctttgactta
atcaaccctgctggaattcaggtttcctttgtgcagtacagcgacgatgcaaagtctgag
tttaaactgaatacatatgaggataaggctcaggctctaggagcacttcagaatattcgg
tacaaaggaggaaatacaagaacaggcaaagcccttacatttatcaaagaaaaagtcctg
acttgggagagtggcatgagaagaggtgtgcccaaggtacttgttgttgtcacagatggt
cggtcgcaggatgaagttaagaaagctgcagcaatcatacagcactctggtttcagcgtc
tttgttgttggtgtagctgatgtggattaccatgagctgtcaaagattgccagcaaaccc
agtgaacgtcatgtatttatcgttgatgactttgatgcttttgaaaagattgaggagaac
ctcctaacttttatttgtgagacagctacctcaacttgccctctcatttacttggaagga
tacacttcacctggtttcaagatgttggaatcatacaacttaacagagaagcattttgcc
tctgtacaaggaatatcactggaatcaggatccttccctagccacgtggcatacaggctc
catagaaatgccttcatcagtcagcctgcatcggagcttcatccagatggattgccacgt
gcttacacaatcatactgctgttccgccttctttcggaaacccccaatgagccatttgca
atttggcagattacagacagggatttcaaaccacaagttggagtaattcttgatccttcc
accaaattattgtcattctttaacaaggatacaagaggagaagttcagacagtaactttt
gatgataatgaagtaaagaaaatcttttatggaagcttccacaaggttcatattgttgta
acctcaacaagtgttaagatttacattgattgcagtgaagtaatggagaaaccaattaag
gaggctggaaacatcacaactgatggctttgaaatacttggaaaactattgaaaggtgat
cggaaatcagcaacatttgaaatccagagttttgacatagtatgtaatgcagtttggact
agccgtgatagatgctgtgatcttccttcaatgagggatgaagcaaaatgcccagctctt
ccaaatgcttgtacatgtacacaagacagcgtgggagccccgggacctcctggacctgct
ggtggtccaggcactaaagggcctagaggtgaaaggggtttgactggacctgccgggcca
cctggtcttcctggtgaggcaggtccaccgggtcctcagggtccaccaggtccacaaggg
atcaatggactttcaattccaggagaaccaggtcgccaaggaatgaaaggtgatgctgga
gaaccagggttaccaggccgatcaggaaccccaggtttgtctggcccacctggcccagta
ggaccaccaggtgacaggggtttcacaggaaaagatggtgccacaggacccagaggccca
cctggatcagtgggcgctccaggagttccaggagtagcaggtccaagtggaaaaccaggg
aaaccaggagatcgtgggccacaaggtccacctggaatgaaaggagaaaaaggtgacaga
ggagatattgcttctcagaacatgatgcgagctgttgcaagacaagtctgtgaacaattg
ataaatggccaaatgaaccggttcaatcacatgctgaatcaaatcccgaacgattactat
gcaaaccgcaatcagccaggacctccaggaccaccagggcctccaggaagcgctggggca
agaggagaacctggacctggaggaagaccagggttcccaggaacacctggcgaccaagga
ccacctggtgaaagaggactgtcaggagagaaaggtgaaagagggattggatcacaagga
ccacgaggtttgcctggaccacctggtccaccaggggaatctcgaacgggcccaccaggt
tctacaggttcacgagggccacctgggccaccaggtcgtcctggaaatgggggtattcga
ggtcccccaggcccacctgggtattgtgattcatcccagtgtgctagcatcgcttacaat
ggtcaaggattcccagagtcatacgtacctgaaagtggaccctatcaacctgaaagtgag
ccctacatagtaccaatggagtcagaaaggagagaggatgaatatgaggactatgaagtt
gaaatgcattcaccagattaccctgaacaaatgtgctggaaaatatcgttaccaagaaaa
gcaaaagcaaaaacaaaaccataa
DBGET
integrated database retrieval system
