Caretta caretta (Loggerhead turtle): 125635135
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Entry
125635135 CDS
T09292
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccay03036
]
125635135 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ccay03037
]
125635135 (ALMS1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
125635135 (ALMS1)
Cilium and associated proteins [BR:
ccay03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
125635135 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
125635135
NCBI-ProteinID:
XP_048702361
LinkDB
All DBs
Position
4:complement(129446255..129582581)
Genome browser
AA seq
2878 aa
AA seq
DB search
MEPGEEEGTERPGQAPPIATTPPHCGWKEELLSQSSSGTQISTASGISLGEAIRQRSAVN
QGMESWYQLPVEMDVSHLAATSGMRLGLTGGGNDLTEFPTLEEGLLTPTEELGRQHTGDM
AHTPLLEIQDSRFSPCLPLLMTYSVQGQKFLDDTLFQQTELDFAPLRGTSDVSDASEQHS
KPLQISEAVQLAATEIPSDLVSGCLTLSEHPLAVSTVEPCDVSCTSYLSQHPICLSGQIP
VERKEKAEDQNCKLGINKSFIPNRDENLTDPNRKMLLNEPETVQPPEVFAAKEATSGFVN
NNFFLDSNVPAPLLLELLEKEVGLSSHGGFSSSESSSCKSISARDPGKNKTMQRVGNIEL
SDRESKVFVRESHQKLEEEKCVPELDSSSMFSDVLRREPFKNSNAPDVFSAKPSEMFMLS
KGHSSDLNDSGRLWFSGVTMEPLGTILDEQQKQLFSKMSGKQEEEPLSAMSKTSVKNSAS
DQPVTASVESGGTCSEKNTVVEIPSGINRSELTLSDFTIERGHKNTGISPLFNLPVDDGS
FFGHLAQPIYQSTPGIFVSRSEKQEVPGKPLPIKSNLQASLICLNEETSRNSSTNTLVSS
AEKHHAFQSGQEINSESCESLRTVYPRTGRIQSLPTLNFMEKVGAWNVNQPMEKIPDALA
LCGLSGVSPRKKAYSAIVDSLNHILSKQSSSSGNLKSGLAAPFGGTGSMTSLHSCDKSAH
ASPLIRSQSDNSVHVISREASQIEVVQATNPDEVVQPTEDKSRVSGMPEIRESGAQLGDS
TTPQFTAVLVTTGSGGGGDDDNNSIGQNSDQNVFISSERVAQLLREEECYPSGEQEKHNG
LENNTRQSHGPELSTSQIGMDHFNDISPDSLNLLASSQASSHVDLTSASSSSVVARDFFT
SLEGDNVIPFLAPTLKTPDKKDINIEERIPMYLRNLGIDQSPSAILTPFVPRGPIREVEF
SPSELRTLKESTDTLTKHVQLSEGSLSAFDVTQISFNSGASTLGMSIPMGSEAGPDTPLP
TELSLQFSRSSKDKPLSQCSIAYHQLELPAAHSTKGGSESSAVSKSVELSQILHTVPAGS
DFEEGHTLVSKRVQKLIDKFESRDIGLSLEKLSASPLAGDADEMDVGGEPLSSNVDASVN
DLNKDQGNDSFIESNTLKEIQKLLAEAENIALTQFDPVPSVAPFQEVGDFSSVPIEKDGS
EDSRLAKEISPALQRILSWDESLTRRSMQEDSSLMKTLNPHRRSLKWESSLAIDLPTKEE
IVEETTKPTQQGAMEACGVAKSIGRSEPEGCSSATVDKNLPALMALTKSSTSSKSSIERV
LELRNPSATEPLGSITSDLGDFQHALAKTKTNVAGSEEGDGIRESDDSSSVDSLAARVKS
LLKNESPVLHATQILKSAEKEERKARAWVKLKLTSQPQGSVSDLNEEDRQRIDEIKTELL
LSARKSVLAKDPWGNNSEAIMSHSHSRRQNTGHFKSPAGKQLQIDSQTQDFKLNESPESN
TRPVTPIYRSDPADYSPLDDAQFKALNTIQKHIYHQLQTLRPNPFDASIELHTPLCKDMD
KFSLGLVDGSCAPKEEDVILSSQKRQSTEKPSVEVAKQITSITFASCKRSQSPLASTVPS
GSLSEDTLHGIMPFEIVSVSAKDQRPGKQQVESSKSCPSSSPTATHSHDNDFKFSADKDR
FQHVPIAVGKLGTSREKEILSGQGSITTYTDQGLTLVADSVEEAESSTHDTLGFGRHSSK
FSGVDRDMKFDQEVNMFYQPLSMSPHQQGKMNLYNQVPFADSSEGPVHSLQNLLLKDHGN
SLEKDKLSSDMFSVSQTNVETGHANVTHCPSPDKTLTAMPESPSSPTRKALSCVHITLSP
KLNSELVSILDAEAETRSNDRLKTVAQQMLSSSPPKILLESASKLLTTESIPKDQSSSHF
PKPISSQDLRYMPLESSQRVPFSSQAHTRVLDSCGHNLQDNFKITVSAQTGKATSDAITQ
ITTESPEKTTFSAEIYMSNEDGETSSFGSSHQRACEIANLATSSLNHISPSHRPADQPLL
LPYKPSGSSEMYYVPHPMKGPKISPVRSETTIESSHSGSNDAIPPNFPAKVLGSMDENPL
DIVAIKHKEGVYSKRSEPKVAWAKEKKTSLEATTESVNHLESVKTTHSVFKTAQFYLHHP
VPLQHESYFLSNDEPSEECTDIGHTGPSSRDFFQNWRAAKKDQHSSSVYPQEGEEDEFSP
LTAEMDYSKVEDLRFNAFLGKEASGKELVQEDQKKVRDYLLSSSQRTDLSRRQKMDLPLK
QSTYSTGSLDELWTKFLERQKKHHLHNLKISNELSLVERLDRLARVLQNPVRHSLMPTEN
GKSNIGEKTRGREQKKIRHQDKKVYESNLDSYRNVLNAEERSDTSYDEKRRVESRQQRAG
ERTINHMKRFLKQKYLDPLSDTSLETMPTKDHVVVTDSSASESDMVTQTEMETTSQTEVS
SSISTIDTARLIRAFGHERVRLSPRLSKLYCTISQQKSRSEKWDKGRSKVVGLKYPNMTS
AERHKKRRDTQAPLKAISGASCKTKMSDSVISSDSVATINGSCGPSSALGNKRHIRMLNK
GIQAGDLEIVNSATKKNTRDVGMTFPTPRSSQVRPQKPSSCADGGFGQLDGGFSDFQNPP
GKGKLKGQPGNFLMDKKTGSNRPQLPQGVSWFVPPEDLKSDSRKENKSSSFSGPGPSWFE
PLTNTKPWRDPLRERNWQKQQGSIKIQPVVPVRDVENKPPRLFVKMTLQEALALHRPDFI
SRSGERVKRLKLIMEERKLQSVLQSEREELFNPPEKKDYKNASYLLYNRDCPVKQKRRTI
LKGEMVQRSKRIYEQLPEVQKRREEEKRKSEYTSYRLKAQLYKTKITNHILGRKVPWN
NT seq
8637 nt
NT seq
+upstream
nt +downstream
nt
atggagccgggcgaggaggaggggacggaacggccgggccaggctcctcctattgctaca
acaccaccacactgtggatggaaggaagagttgttaagccaaagcagcagtgggacccag
atttcaactgccagtgggatctccttgggagaagcaatccgacagagatctgccgttaat
cagggaatggagtcgtggtatcagcttccagtagaaatggatgtcagccatctagcggca
acatcagggatgaggttgggcctgactggtggtggaaatgacttgacagagttccctact
ctggaggaaggcttgttgactccgacagaagagcttggaaggcagcatacaggcgacatg
gcacacactccgctattggaaattcaggacagtcgcttctctccctgtctcccactactg
atgacatattcagtgcaaggtcagaagtttttggatgataccctgtttcagcaaactgag
ctggattttgctcctctaaggggaacctctgatgtttctgatgcttctgagcagcattca
aagcctttgcagatcagtgaagctgtgcagctggcagccactgaaataccttcagactta
gtcagtggctgcttgaccctgtccgagcatccacttgcagtcagcactgtagaaccttgt
gatgtcagctgcaccagctatttgtctcagcaccccatttgtctttctggacagatacct
gtggagaggaaggagaaggctgaagatcaaaattgtaaacttggtattaacaagtctttc
atccccaatagagatgaaaatttaacagacccaaatagaaaaatgctgctaaacgagcca
gaaacagtacagcctccagaagtatttgctgcaaaggaagccactagtggttttgtaaat
aataacttctttttagacagcaatgtgccagctcctctcctccttgagcttctggaaaaa
gaagtaggattatcgagccatggtgggttctcatcttcagaaagctcttcatgcaagagc
atatcggctagggacccagggaaaaacaaaacaatgcagcgagtaggaaatattgagctt
tctgacagggagtcaaaagtgtttgtaagagaatcacatcagaagctggaagaagaaaag
tgtgttcctgagcttgactcctccagtatgttttctgatgttttgaggagagaacctttt
aaaaattccaatgccccagatgtgttttctgcaaagccttcagaaatgttcatgttgtcc
aagggacatagttcagatctgaatgactctggcagattgtggttctctggtgttactatg
gagcccctgggaaccattctagatgagcagcaaaaacaactgttttctaaaatgtctggg
aaacaggaagaggagcctctctctgctatgtccaaaactagtgtcaagaacagcgcatct
gaccagccagtcacagctagtgtagaatctggtggaacatgcagtgagaagaatactgtt
gtggaaatcccgtctggaattaacagaagtgaattaactctttcagacttcaccatagaa
aggggacataaaaatacaggcatttcacctttatttaatcttcctgtagatgatggttca
ttctttggacatttagctcaaccaatctatcagtccaccccggggatatttgtaagcaga
agtgagaagcaggaagtacctggtaagccccttcctatcaaatcaaatcttcaggcttct
cttatttgtttaaatgaagaaacttctaggaactcatctacaaatacacttgtttcttct
gctgagaagcatcatgcattccagagtggacaggaaataaacagtgaaagttgtgagtcc
ttaagaacagtgtatcctcgtactggaagaatccagtctctccctacccttaatttcatg
gaaaaggtaggagcttggaacgtgaaccagccaatggagaagatacctgatgctttggct
ttatgtggcttgagtggagtttctccaaggaagaaagcctacagtgcaattgttgattcc
ttaaatcatattttatcaaagcagagcagcagcagtggtaacctcaagagtggtttagcc
gcaccctttggcgggacgggttcaatgaccagtttgcattcctgtgataagtcagcacat
gcttcaccacttatcaggtctcagtctgacaactcagtacatgttatcagcagagaggct
tcacagattgaagttgttcaagcaacaaacccagatgaagttgttcagcctacagaagac
aagagcagagtttctggaatgcctgaaattagagaaagtggtgctcagttaggagactcc
acaaccccacagtttacagctgttcttgtcactactgggtccggtggtggtggtgatgac
gacaataatagcataggacaaaattcagatcaaaatgtcttcatttccagtgaaagggtt
gctcaacttctcagagaggaggaatgctatccaagtggtgagcaagagaaacacaatggt
cttgaaaataataccagacagtcacatggtccagaactctctactagccagattggtatg
gatcatttcaatgacatttctccagatagtttaaacctcctggctagttcacaggcaagt
agccatgttgacttgacctctgcaagctcttcttcagtagttgccagggattttttcacc
agtttagaaggggataacgtcattcctttcttggctcctactttgaaaactccagataaa
aaagacataaatattgaagaaagaataccgatgtatcttcgtaatcttggcattgatcag
tcaccttcagctatactgactccatttgtacccagaggaccaatcagggaggttgaattt
tccccatcagagctcagaacattgaaggaatccactgacaccttaacaaagcatgtccag
ctatctgaaggttctctgtctgcatttgacgttactcagataagctttaactctggtgct
tccacgctcggcatgtctataccaatgggttcagaagcgggccctgatactccattaccc
actgagctctcacttcagttctcaagatcttccaaagacaaaccactgagtcaatgcagt
attgcctaccatcaactggagctacctgccgcacactccaccaaaggcggctcagaatct
tctgctgtttcaaaatctgttgaactgagccagatacttcatacagttccagctggctct
gactttgaagagggtcacactcttgtttcaaaacgtgttcaaaagctgatagataaattt
gagtctagggatattggcctcagcctagagaagttgtccgctagtcctttggctggagat
gcagatgaaatggatgtcggtggagaaccactgtcttcaaatgtagatgcctcagttaat
gatttaaataaggatcaaggaaatgattccttcattgaatccaacacattgaaagagatc
cagaaacttttagcagaggcagaaaatatagctttgactcagtttgatcctgtcccttct
gttgcccctttccaagaagtcggcgacttttcatcagtgccaattgaaaaggatggttct
gaagattccagattagcaaaggagatcagtccagcacttcagagaatattatcgtgggat
gagtccttgaccagaagaagcatgcaagaagatagttcactaatgaagaccctgaatccc
cacaggcgcagtttaaaatgggaaagctctcttgctattgatttacccaccaaggaagaa
attgtggaagagacgactaaaccaacacagcagggagctatggaagcttgtggcgtagca
aaatccatagggaggtcagaaccggagggttgcagtagtgcaacagtagataaaaacttg
cctgctctcatggctcttacaaagagtagtacaagtagtaaatcaagcattgaaagggtt
ttagaactgcggaatccttctgccacggagcccttaggcagcatcaccagtgaccttggg
gattttcagcatgccttggctaaaactaaaaccaatgtggctggcagcgaagagggagat
ggcattcgagagagcgatgatagtagcagtgtagattcactagctgcccgtgtcaaaagt
cttctgaaaaatgaatctcctgtgctacatgcaacacaaatactaaaaagtgcggagaaa
gaggagagaaaagctcgtgcatgggtgaagctgaagctgactagccagcctcagggttct
gtgtcagatctgaatgaagaggacaggcagagaatagacgagatcaagacagagctgctt
ctgagtgccaggaagtctgtgttagccaaggatccatggggaaacaattcagaggctata
atgagtcacagccatagtcggaggcagaacacaggacacttcaaatctccagctggcaaa
cagttgcaaattgacagccagacacaagatttcaaacttaatgagtctccagagtcaaac
acaagaccggtcacaccaatatatagaagtgaccctgctgattattcaccactagatgat
gcacagtttaaagctttgaataccatccaaaaacatatctaccatcagctgcagacgctc
agacctaatccctttgatgctagcattgagctccacacacccttgtgtaaagatatggat
aaattttcattgggattggtggatggctcctgtgcaccaaaagaagaggatgtgattctt
tcatctcagaagaggcagtctacagaaaagccttctgtagaagttgcgaagcagattact
tccatcacttttgcatcctgtaaacgatcccagtctccattagcttccactgtccctagt
ggcagtctcagtgaagatactcttcatggtataatgccttttgaaattgtatctgttagt
gctaaagaccagagacctggcaagcaacaagtggaaagttctaaatcatgtccttcgtca
agcccaacagccactcactcacatgataatgattttaagtttagtgcagataaagacagg
tttcaacatgtgcccattgctgttggcaaacttggaacttctcgagaaaaagaaatttta
tcaggtcaaggttctataaccacatacactgaccaaggactgaccctagttgcagatagt
gttgaggaagctgaatcttccactcacgatactcttgggtttggcagacatagttccaaa
ttttctggggttgatcgtgatatgaaatttgatcaagaagtaaatatgttttatcaacct
ctttccatgagtcctcatcagcagggaaagatgaatctctacaaccaggtaccctttgca
gatagctcagaaggtccagttcatagcctacaaaaccttttgcttaaagaccatggtaat
tcgttggaaaaggataaactttcttctgatatgttctccgtcagccagacaaatgttgag
accggacatgccaatgtgacacattgtccttccccagataaaactttaaccgccatgcct
gaatctccttcatctccaaccaggaaagcactgtcttgtgtccacataactctctcccca
aaacttaattcagaactggtcagtatattggatgctgaagctgaaacaagatctaatgac
agacttaagactgttgctcaacaaatgctttcaagctctccccccaaaattttgttagaa
tctgcctctaaattattaactactgaatctatcccaaaggatcaaagttcttcacacttc
ccaaaaccaatatcttcacaagatttaagatatatgcctctggaaagtagccagagggta
ccattctcaagtcaggctcacaccagagttttggattcatgtggacataatctgcaggat
aatttcaagatcacagtttctgcacaaactggaaaggcaacatctgatgccataactcag
ataacaacagaaagtcctgaaaagacaacattttcagcagagatatatatgagcaatgaa
gatggtgaaaccagttcctttgggtcctctcaccaaagggcatgtgaaatcgctaaccta
gctacttcatctctgaaccacatttcgccttcccacaggccagctgatcagcctctgttg
ttgccatataagccttctggaagttccgagatgtattatgttccccatccgatgaaagga
cccaaaatatctcctgtcaggtcagagaccactattgagagctctcactcaggatcaaat
gatgctattcctccaaattttccagcaaaggtacttggctccatggatgagaatcctcta
gacattgtagctattaaacataaagagggtgtctacagtaagagatctgagcctaaggta
gcctgggcaaaagaaaaaaagacatcactggaagctactacagagtctgtgaatcatttg
gaatctgtaaaaacaactcattcagttttcaagacagcccagttttaccttcaccatcca
gtgcccctgcaacatgagagttacttcctctctaatgatgagccttcagaggagtgcact
gatattggacacacaggaccttcttcaagagatttcttccaaaactggagagctgccaag
aaagatcaacactcatcctctgtttatcctcaagagggtgaggaggatgaattctcccca
ctaactgcagaaatggattatagcaaggttgaggacttgagattcaatgcatttttgggg
aaagaagcttcagggaaagagcttgtacaagaggaccaaaagaaggtcagagattatctg
ctatcaagcagccaaaggactgacttaagcaggagacagaagatggatctgccactaaaa
cagagtacctattccactggcagtttggatgagctttggactaagtttttagagcgtcaa
aagaagcaccaccttcataatcttaagatcagcaatgagctgtccctagtggaacgcctt
gatcgactggcccgagtcctccagaatcctgttaggcattcactaatgcctacagagaat
ggcaagagcaatattggagagaaaactaggggaagagagcagaagaaaataagacatcag
gacaagaaggtatatgaaagtaacctagactcttatagaaatgtactgaacgctgaagaa
agatcagataccagttatgatgaaaaaagacgagttgagtctagacaacaaagggcagga
gagagaactatcaatcacatgaagagattcttgaaacaaaaatatttagaccctctgagt
gacacctctttagagactatgcctactaaagaccacgttgtggtgacagattcttctgcc
tctgaatcagacatggtgacccaaacagagatggaaacaacttctcagactgaggtgagc
agttccatttccaccattgacactgccaggctgatcagggcttttgggcatgaaagagta
cgcttgtcaccaagactgtccaaactgtattgcaccatcagtcagcagaaaagtcgctct
gaaaagtgggacaagggaagaagtaaagtagtgggcttgaaatatcctaacatgacttct
gctgagcgacataaaaaaagaagagatactcaggcacccctcaaagctatatctggcgcc
agctgcaaaaccaagatgtcagactctgttatttcatcagattctgttgctacaatcaac
ggttcctgtggaccaagttctgccctcggtaacaagcgacacatacggatgttaaacaag
ggcatccaagcaggagatttggagattgtgaacagtgcaactaagaaaaacactcgagat
gttggtatgactttccccaccccaagatctagccaagtgaggccacagaaaccctcaagt
tgtgccgatggtgggtttgggcagttggatggtgggttttcagactttcaaaacccacca
ggcaaggggaaactgaagggacagcccggcaattttctcatggacaaaaagacaggaagc
aacaggccacagctaccacaaggagtttcctggtttgttcctcctgaggatttaaagtcc
gactctaggaaggagaacaaatctagctccttttctggtccaggtccatcctggtttgag
ccactgaccaacacaaagccatggagagatccactccgagagaggaactggcaaaagcag
caaggcagcatcaagattcaaccggtagtcccagtaagagatgttgagaacaagccccca
agactgtttgtgaaaatgacgttgcaggaggctcttgcattgcaccgccctgatttcatc
tcccgctctggggagcgtgtgaagcgcctgaagctcatcatggaagaaaggaagctacag
agtgtgttgcagagtgagcgagaggagctgttcaatccccctgagaagaaggattataag
aatgctagttacctgctctataacagagactgcccggttaaacagaagagaaggaccatt
ctaaaaggtgaaatggttcagagatcaaaacgaatctatgaacagctgcctgaggtgcag
aagaggcgagaggaagagaaaagaaaatctgaatatacttcataccgactgaaagcacaa
ctttacaaaacgaaaatcaccaatcacatcttagggagaaaagtaccttggaactga
DBGET
integrated database retrieval system
