Caretta caretta (Loggerhead turtle): 125635318
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Entry
125635318 CDS
T09292
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03020
RNA polymerase
ccay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125635318 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
125635318 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125635318 (POLR2B)
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125635318 (POLR2B)
Enzymes [BR:
ccay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125635318 (POLR2B)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125635318 (POLR2B)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125635318 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
125635318
NCBI-ProteinID:
XP_048702827
LinkDB
All DBs
Position
4:36321560..36346903
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaggatatgcaatatgatgaagatgatgatgaaatcactccagat
ttatggcaagaagcatgctggatagttattagctcctattttgatgagaaggggttggtc
cgacaacagctggattcttttgatgagttcattcagatgtctgtgcagagaattgtagaa
gatgcaccacctatcgatctacaagctgaagctcagcatgccacaggggaagttgaagaa
ccgccacgatatctgttgaagtttgaacaaatctatctctccaagcctacgcattgggaa
agagatggtgcaccttcacccatgatgcccaatgaagccagattgagaaatcttacatat
tctgctcccttgtatgtggacataactaaaacagttattaaagaaggagaggaccagtta
cagacacagcatcagaaaacctttataggaaaaattcctatcatgctccgttcaacatac
tgcctgttgaatggcttgactgatcgtgatctttgtgaactgaatgaatgtcctcttgac
cctggtggctatttcattattaatggatcagaaaaggttctgattgctcaagagaagatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcgaaatatgcttacacaggagaa
tgtagatcctgcctggagaattcctctagaccaactagtactatatgggttagcatgctg
gccagaggagggcagggcgcaaagaagagcgctattggtcagcgtattgtagcaactctt
ccatatatcaaacaagaagtgcccatcattattgttttccgtgcattaggttttgtatct
gacagagacattttagagcacataatttatgactttgaagatcctgagatgatggaaatg
gtcaaaccttccttagatgaagcatttgtcatccaggaacagaatgttgcattaaacttc
atcgggtcaagaggtgcaaagcctggtgttaccaaagagaaaagaattaagtatgcaaaa
gaagtcttacagaaggaaatgcttccacatgttggtgtcagtgacttttgtgaaaccaaa
aaggcctattttctgggatatatggttcatagattactactggcagctctgggcagaaga
gaactcgatgacagagatcattatggcaacaaaagacttgatctagcagggccattgctt
gcattcttgttcagaggaatgtttaagaatttgctcaaagaagtgagaatatatgcacaa
aaatttattgacagagggaaagattttaacttggaactggcaattaaaacaaggattata
tcagatggtttgaaatactcattggctactggaaactggggtgatcagaagaaagctcat
caggccagagcaggagtatctcaggtgttaaaccgcctgacctttgcatccacactttcc
cacttgagacgcttgaattctccaattggtagagatggtaaactagcaaagcccagacag
ctgcacaatacattgtggggaatggtctgtcctgctgagactccagagggccatgcagta
ggacttgtgaagaacttagccttgatggcttacatttctgtggggtctcagccatctccg
attctggaatttttagaagaatggagtatggaaaatctggaagaaatatctccagcagcc
attgcagatgcaaccaagatctttgttaatggctgctgggtaggaatacacaaagatcca
gaacagctgatgaacacactaagaaaattacgtcgtcagatggacataattgtgtcagag
gtctccatgatcagggatattagggagcgagaaatccgcatctatactgatgctggcaga
atctgcaggccacttttaattgtggaaaaacaaaagctgctgttgaagaagaggcatatt
gaccaactaaaagaacgagagtacaacaactacagttggcaggatctcgtggccagcggt
gtagtagaatacattgatacgctagaagaggagactgtgatgctggcaatgactccagat
gacttgcaggagaaaggagtggcatactgttcaacttacacacattgtgagattcacccg
tccatgatcctaggagtatgtgcatctattattcctttccctgatcacaaccagtctcct
aggaacacataccagtctgctatgggtaaacaggctatgggagtttatattacaaacttt
catgttcgtatggatacactagcccatgtgttgtattaccctcaaaaaccccttgtgact
acacgctctatggagtacttgcgatttagagagttgccagcaggtatcaactcaattgtg
gccattgcgtcatacaccggttataatcaggaagactctgtcatcatgaaccgttctgct
gtcgatagaggttttttcagatctgttttctatcgctcatataaagaacaagagtccaag
aaaggatttgaccaagaagaagtttttgaaaaacctacacgtgaaacttgtcagggtatg
aggcatgccatctatgacaaactagatgatgatggtttgatagcacctggtgtacgtgtg
tcaggagatgatgtcatcattggcaaaacggtaactctgcctgagaatgaagatgaactc
gaaagcactaatagacgatacacaaagagggactgtagcactttcctacgaactagtgag
actggtattgtagaccaggtcatggtaacccttaatcaggaaggatacaagttttgcaaa
attagggtgcgctctgtgagaatcccacaaattggagataagtttgccagcaggcatggt
cagaagggtacctgtggtatccagtacagacaggaggatatgcctttcacctgtgaaggt
atcacacctgacataatcatcaacccccatgccatcccttcccgtatgacaattggtcac
ttgattgaatgccttcaagggaaggtatcggcaaacaagggagaaattggtgatgctaca
cctttcaatgatgctgtcaatgtgcagaagatttccaatctattatcagattatggctat
catctgagaggaaatgaggttctctacaatggcttcactggacgcaaaatcacatcacaa
atcttcattggtcctacttactaccagaggttgaaacatatggtagatgacaaaattcat
tctcgtgcaagagggccaattcaaattcttaacaggcaaccaatggaaggtagatctcgc
gatggtggccttcgttttggagaaatggagcgagactgtcagattgctcatggagcagct
caatttttgagagagagattgtttgaggcttcagacccataccaagttcacgtttgcaat
ctttgtggaataatggcaatagctaacacaaggacacacacgtacgagtgcagggggtgc
cgtaataaaacacagatttccttggtgcgaatgccatatgcctgtaaactcctctttcaa
gagctgatgtccatgagtattgcacctcgtatgatgagtatttag
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integrated database retrieval system
