Caretta caretta (Loggerhead turtle): 125636432
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Entry
125636432 CDS
T09292
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125636432 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125636432 (SMARCA2)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125636432 (SMARCA2)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125636432 (SMARCA2)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
125636432 (SMARCA2)
Chromatin remodeling factors
BAF complex
125636432 (SMARCA2)
PBAF complex
125636432 (SMARCA2)
GBAF(ncBAF) complex
125636432 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
125636432
NCBI-ProteinID:
XP_048705426
LinkDB
All DBs
Position
5:94802958..94990065
Genome browser
AA seq
1572 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHSMPSM
GPTDYPQEGMHQMHKSIDGLHEKGMVEDMHCSSMKSASMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPMSGGGPTPPHMPPSQPGPMIPGDPQVMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPENLQLAVQGKRTLPGIQQQQASANYSRPPVAGIGVHSITGP
TTGPGPASGVPGHAAAMTPKPWAEGQGPDMNVASTPQKLAVPPPSGRPSPAPPAAQPSAA
MPGPSVPQQTPGQPSPIVQLQQKQNRISPIQKPQGLDPVEILQEREYRLQARIAHRIQEL
ENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQ
TLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVA
TWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLT
NLVWEHKQAQAAKEKKKRRRRKKKAEENAEGMGSDLGPDGEPIDESSQMSDLPVKVTHTE
TGKVLLGPEAPKASQLDAWLEMNPGYEVAPRSDSEEESDSEYEEEDDDDESSRLEADEKI
LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIAERVEKQSALLI
NGSLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV
PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL
AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP
TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY
MFQHIEESFAEHLGYSSGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT
IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT
VIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR
RREDARNPKRKPRLMEEDDLPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL
TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDSGKEDGEKAKKRRGRPPAEKLSPNP
PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN
HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEDESEDESND
DEEDEEEDESESESKSVKVKIKLNKKDEKSRDKGKGKKRQSRVKAKPVVSDDDSDEDQDE
NDQSEASGSDDE
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccaacagatcctggcgcaatgcctcatcctggcccttccccggggccaggc
ccatcacctggaccaattctaggacctagcccaggaccaggaccctctccaggttcagta
cacagcatgatgggaccgagtcctggaccacctagtgttccacattcaatgcctagcatg
gggcccactgattatccacaggagggcatgcaccaaatgcacaagtccattgatggcttg
catgaaaaaggaatggttgaagacatgcattgtagctccatgaagagtgcaagtatgaga
ccgcctcaccctggaatgggcccaccacagagtccaatggatcagcatagccaaggttat
atgtctcctcacccatctcctttgggagcaccagaacatgtgtccagtccaatgtctgga
gggggcccaactccaccccacatgccaccaagtcaaccaggacccatgataccaggagat
ccacaggtcatgagccaacccaacagaggtccttcaccttttagccctgtccagctgcac
cagcttcgggctcagattctagcttacaaaatgttagctagaggccagcctttacctgaa
aatctgcaacttgctgttcaagggaagaggacattgcctgggattcaacagcaacaggct
tctgctaactacagcagaccacctgttgcaggtattggggtgcattcaattactggtccc
acaactgggccaggacctgcttcaggagtgccaggacatgcagctgctatgacccctaaa
ccttgggcagaaggtcaaggcccagatatgaatgttgccagtaccccacaaaagcttgct
gtaccacctcctagtggaaggccttcacctgcccctcctgctgctcagccttctgcagcc
atgcctggtccttctgtaccacagcaaacccctggacagccttcacctatcgtccagctg
cagcaaaaacagaaccgtatcagccccatccagaagccacaaggactggatcctgttgaa
atactccaggagcgtgaatacagacttcaggctcgaattgctcacagaatccaggaactg
gagaatttacctggctctctgcctcctgatctgcgaaccaaagctacagtcgagctgaag
gcacttaggttactgaattttcagcgccagctaagacaagaggtggtggcctgcatgcgc
cgtgacacaacactggagacagcactgaactccaaagcctataagcgcagcaagcgccag
actctgagggaagcccgcatgacagaaaagcttgagaaacagcagaaaatagaacaggag
agaaaacgtagacagaaacaccaggaatatctgaacagcatattgcagcatgctaaagat
tttaaagaataccaccggtctgtggctgggaaaattcagaaactttctaaagctgtggca
acttggcatgccaatactgagcgtgagcagaagaaggaaactgagcgaattgagaaagaa
agaatgagaagactgatggctgaagatgaagaaggctaccgtaagctgattgaccagaag
aaagacagacgtctggcatacttgctgcagcagacagatgagtatgtggccaacctgact
aatctggtgtgggagcataagcaagcacaagctgccaaagaaaagaaaaagaggaggaga
agaaagaagaaggcagaagagaatgcagagggaatgggatctgatcttggtcctgatgga
gagcccattgatgagagcagtcagatgagtgaccttccagtcaaagtgactcacactgaa
acaggcaaagttcttcttggaccagaagctccaaaagcaagtcagctggatgcttggtta
gaaatgaatcctggctatgaagttgctcctaggtctgacagcgaggaggagagtgactct
gaatatgaggaggaggatgatgatgatgaatcaagtagattagaagcggatgagaaaata
cttctggatcctaacagtgaagaggtttctgagaaggatgctaagcagatcattgagaca
gccaaacaagatgtggatgatgaatacagcatgcaatatagtgctagagggtctcagtcc
tactatacagtcgctcatgcaattgctgagagggtggagaaacagtctgctcttcttatt
aatggatcactaaaacattatcaaatccagggcctggaatggatggtttcactttataat
aacaatttgaatggaattttagctgatgaaatggggctaggaaagaccatacagactatt
gcactcatcacttatctgatggagcacaaaagactcaatggcccctatctcatcattgtt
cccctttcgactttatctaactggacatatgaatttgacaaatgggctccttctgtggtg
aaaatttcttacaaggggacacctgccatgcgtcgctcacttgttcctcagcttcgaagt
ggaaaatttaatgttcttttaactacttacgaatacataataaaagacaaacacattctt
gctaagattcgatggaagtatatgatagtagatgaaggccatcgaatgaagaaccatcac
tgcaagctgactcaggtcttgaacacccactacgtggcccctagacggattctgttgact
gggacaccactgcagaacaagttgcctgaactttgggctctcctcaacttcctcctcccc
accattttcaagagctgcagtacctttgaacagtggtttaatgctccatttgccatgact
ggagaaagggtggacttaaacgaggaagagactattctgatcatcagacgtctccacaaa
gtgttacgacccttcttgctgaggagactgaagaaagaggttgaatctcaactgccagaa
aaggttgaatatgtgatcaaatgcgacatgtcagctcttcagaagattctctaccgccat
atgcaagcgaagggaatcctcctcacagatggctccgagaaagacaagaagggaaaaggt
ggggcaaaaactcttatgaacactatcatgcaattgagaaagatatgcaatcacccatat
atgtttcagcatattgaggagtcctttgctgaacacttgggctattcaagtggtgttatc
aatggagccgagctttatcgggcctcagggaagtttgaactacttgatcgtattctacca
aagttgcgagccactaatcaccgtgtgcttctcttctgtcaaatgacatccctcatgacc
attatggaggactattttgcttttcgaaatttcctttacctgcgccttgatggtacaaca
aaatcagaggatcgggctgctttgctgaagaagttcaatgagcctgggtcacagtacttt
atcttcttgttgagcacaagggcgggaggcctgggcctgaatcttcaggctgctgacact
gtcattatctttgacagtgattggaatcctcaccaggatttgcaggcacaagacagagct
caccgaattggtcagcagaatgaggttcgagtcctgaggctgtgcactgtaaacagtgtg
gaggagaagatacttgctgctgccaagtataaactgaatgtggatcagaaagttattcaa
gccggcatgttcgatcaaaaatcttcaagccatgaacggagggctttcctacaggctata
ttggaacatgaggaagaaaatgaggaagaagatgaagttcctgatgacgagactctgaat
cagatgattgcacggcgtgaagaggaatttgatctcttcatgcgtatggacatggatcgt
cgcagagaggatgcccgaaaccccaagcgcaagcctcgcttgatggaggaggatgatctg
ccatcctggattattaaagacgatgctgaagtggaaaggctcacctgtgaggaagaggaa
gaaaaaatatttgggagggggtcccgtcagcgcagagatgtggactacagtgatgctctc
acagagaaacagtggctcagggcaatcgaagacggcaatttggaagaaatggaagaggaa
gtccgtcttaaaaaacgaaagagacgaagaaatgtggataaggattctggcaaagaagat
ggagagaaggcaaagaagaggagaggcagacctcctgcagaaaaattgtcacccaaccca
ccaaaactgacaaaacagatgaacgccattatcgatactgtgataaactataaggacagt
tcaggacggcaactaagtgaagtcttcattcagctcccatctaggaaagaattgccagaa
tattatgagttaattaggaagccagtggacttcaaaaaaataaaggaaagaattcgtaac
cataagtaccgtagccttggtgacttggaaaaagatgtcatgttgctgtgtcacaatgct
cagacattcaacttggagggatcgcagatttatgaggattctattgttctccagtcagtc
ttcaagagtgcccgacagaagattgccaaagaggatgagagcgaggatgaaagcaacgac
gatgaggaagatgaggaggaagatgagtcagagtcagaatcaaaatctgtgaaagtgaaa
atcaaactgaataagaaggatgagaaaagccgggacaaagggaaaggcaaaaagcggcaa
agccgggtaaaagccaagcctgtcgtgagtgatgatgacagtgatgaagatcaagatgaa
aatgaccagtcagaagcaagtggaagtgacgatgagtga
DBGET
integrated database retrieval system
