Caretta caretta (Loggerhead turtle): 125636917
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Entry
125636917 CDS
T09292
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04512
ECM-receptor interaction
ccay04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125636917 (FREM1)
04518 Integrin signaling
125636917 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ccay04091
]
125636917 (FREM1)
Lectins [BR:
ccay04091
]
C-Type lectins
Lecticans
125636917 (FREM1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
125636917
NCBI-ProteinID:
XP_048706766
LinkDB
All DBs
Position
5
Genome browser
AA seq
2185 aa
AA seq
DB search
MKPFENSSLFPLLAVILRCVSSSFISVNLGVKVMKGQSVFLSEDDLQFSIPREKDACKVE
VVINEPITQRVGKLTPQVFDCHFLPNEVKYTHNGCPILDEDMVVLRLYRFTETETFTEMF
ILQVQLLEPDCNIIKMSTNVLEVPEFYGLSREIDKNVLTFDYDKKTNLECTIRLASLETL
LPAHGQLVIGEPQQEEPRGDQPHSFFPRSKHRTSQRCTSGNCVPELKVIQNTKMSCEEFL
LMGIRYQHLDPPSPNIDYIPIRLDLTDSRSKTLHKTEHAWLPIRIKGAIPNQNPRAAFMA
MFILEVDQFILSPMTTTTVDAEDSETPKSLLVFNITKPPPQGYITHLLDHTKPITSFTWK
DLSEMLIAYQPPNNSHTERRNYEVELEVHDFYFERSSPITVHISIRTTDTNAPRVSWNTG
LDLLEGQSRPITWQQFQIVDNDNIRGVRLVTVDGLQHGRLTVRGGKGFMFTVSDLRTGVV
RYHHDDSDSTKDFVVFRIFDGHHSIRHKFPINILPKDDSPPFLISNVVIELYEGQTILIQ
GYMLQASDMDSSDDYIFFNVTKPPQAGEIMKKPGPNLIGYPVTGFLQRDLFKGLIYYRHL
GAEIFEDSLEFVLCDSHDPPNLSEPQVVIVHIIPVDDQLPKEASGVTRHLTIEETKIAHL
TKKHLHFIDMEAQERELIYTVTTSPFFSSTHGPSDAGKLFMVDSIPKLVKDLSAPALRSF
TQHAVNYMKVAYMPPIQDIGPEPQHVQFIFSISNQHGGTLFGICFNITVLPVDNQAPEVF
TNNLKVEEGGLCTITESHILLSDVDTKQETLHIYLQRQPLHGMVELDGFPMTDGDRFTCQ
DLHMLKVRYQHDGSETLQDDILFAATDGINSLEFVLRVKVLPVNDEPPIMKDGLIPLIQC
PEGEEVVITSEYICATDADSDDMRLTFMLARQPHYGVVRKAGVVVDLFSQADVVSGVVTY
KHTSGEIGLTPCFDSLTLVISDGEAGVDVNDCCYDGLLPPPVPLHDSFPVYDLNISVFPV
DNQPPSITIGAMFVVDEGFSAVITTNNLFATDPDTAADDLEFVLVSPPQFGYIENILPSP
GFEKSNIGISIASFQLIHLKALHINYVQSRHMRTEPTSDQFMIYVTDGKHHSVETPFYVL
INPTNDEVPEFIARNITVQEGQMKELDPSVINVLDLDVPQDHLRFTVVQKPQHGFLIHGV
YGNDVMSYKRFISSHHSHERPVHDFSMELLKNGMRLVYMHDDSENLTDGFTLQLSDGKHK
VLRTILVKVIPVNDEKPMLSKKDEIAVNMGETRIISSAVLSAEDKDTPRERIYYLFERIP
ENGQLQLKVGRDWVTLQTEMKCTQEEIDMNLVRYVHTGAMGSRNQDSFTFHLWDGDNKSP
PMDFYITIKDMEKGDIAVFVRPFTVSKGDRGFLTTDVLLAIDGTDKPEELLYVITSPPQY
GQIEYVSYPGVPITSFSQMDVAGQAVCYVHNSKAAVPRDLFRFIISNGLKTNHGTLEITL
ETVDQALPIVSRNKGLRLVEGTMALLSPDVLQLSDPDTSSKNLTFLLAQLPQYGHLCYRG
AVLLHHNFTQQDVDNMDMAYRHGGGASQIDRFTFVATDRTNDGFIIDGKVQMEPVAFTIQ
VDHLDKTAPKIVHLRCSSDVERLKNGNYGIYITARSLKAYDPDTEEDKVIFKILRGPRYG
YLENITTGGFIQEGFSQKDLNGKIILYVINPSWEVNSDSLEFQVTDPTGNSAAPQTLELR
WSQIEMQQAEYEVCENVGMLSLKITRSGHSIDSAFIAVKVNEVSATLGKDFTVTPSKLIQ
FDPGMSTKTWNIAITYDGLEEDDEVFEVVLNSPVNAVLGTRTKAVVKILDSKGGQCSSFR
SSGQNKPNLRGTGALLPVSSGSSSPSNPGTVHLEEIPLSSSRVMMVDRGDVLQEFNLVNL
SRMRLRAVRNGKIVHPSSVLSNGTHVAFKYHGLVSLRVEDDTSSANANKANKSIINQGQT
KINVISSRKTEVPQADKAELMSESHSSQQDLVLSFPKSCTPDLDGLLHFEEGTQNLFQCD
GISWKLWTSESKDVSMKKCPSGWSHHGSSCYFLITDQKVTWNTAARACREQYLGSLASVV
TKQHMQWLWDFSGRKPFWIGFNDQVNPGHWEWNGGEPVTFTNWRRSPSRFSKQGKNCVLV
QRRGKWQAKDCRKGNRHNYVCSRKL
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttttgagaatagcagtttgtttccactgctcgctgttatcctgagatgcgtc
tcctcctcctttatcagtgtcaaccttggggtgaaagtgatgaagggccagtctgtcttc
ctgtcagaagatgacctgcagttttccattcccagagagaaagatgcttgcaaagtggaa
gttgtgattaatgagccaataacacagagggttgggaaactaactccacaggtatttgac
tgtcatttccttcctaatgaagtcaagtatactcataatggctgtccaattttggatgaa
gacatggtcgtgcttaggctgtacagatttacagaaacagaaacattcacagaaatgttc
attcttcaagttcaattacttgagccagattgtaatatcatcaaaatgagcaccaatgtg
ctggaggtccctgagttttatggcctgtccagggagattgacaagaatgtgctcactttt
gactatgacaagaagacaaacctggagtgtaccatcagacttgcctctttagaaactctt
cttccagcccatggtcaacttgtcattggagaacctcagcaagaagagcctcgtggagat
caacctcatagcttcttccctagatccaagcacagaacaagtcaaaggtgcacgagtggg
aactgtgttccagaactgaaggtgattcagaacaccaaaatgagctgtgaggaatttttg
ctgatgggaattagatatcagcatcttgaccctccttcacccaacattgattatattcct
atcaggctggacctcacagacagcagaagcaaaactctgcacaagacagagcatgcatgg
ctccctatccgaatcaaaggtgccattcccaaccaaaaccccagagctgccttcatggct
atgttcatcctggaggtggaccagtttattttgagccccatgacaacaacaacggtggat
gctgaagacagtgaaacacccaaatccctgctagtgttcaacattaccaagccaccccca
caaggctacatcactcatctgttagaccataccaagcctatcacctccttcacgtggaaa
gatctcagtgagatgcttatagcatatcagcctccaaacaacagccatacagagaggagg
aattatgaggtggagttagaggttcatgacttctactttgaaaggagttcaccaatcact
gtgcatatttccatcagaacaacagatacaaatgctcctcgggtgtcatggaatacaggc
cttgatctcctggaagggcagtcccgaccaatcacgtggcaacagtttcaaatagtggac
aatgacaacatcaggggtgttcgcttggttacagttgacggcttacagcatggacggctc
actgtaagaggagggaaaggattcatgttcacggtctctgaccttaggactggggttgtt
cgctaccaccatgatgacagtgactctacaaaggattttgtggtatttaggatctttgat
ggccaccacagtattcgccataagtttccaatcaatatcctgcctaaagatgacagcccc
cctttccttatcagcaatgttgtaattgaactgtatgaagggcagaccattctgatccag
ggctacatgcttcaagcttctgacatggactccagtgatgactacatattctttaatgtt
accaaaccaccacaggctggagaaatcatgaagaaaccagggccgaaccttatagggtat
cctgtcactggcttccttcagagagatctgtttaaaggactaatttactaccgtcacttg
ggagcagaaatatttgaggattcccttgagtttgtcctgtgtgatagccatgaccctccc
aatctctcagagccacaggtggtgatagtgcacattattcctgtggatgatcagcttcca
aaagaagcttccggggttacccgccacctcactatcgaggaaactaagatagctcactta
actaagaaacatctccatttcatagacatggaagcacaagagagggaactcatctacaca
gtaaccacctccccatttttctcttctactcatggcccctctgatgctgggaagttgttt
atggtggacagcatccccaaactagtcaaggatctttctgctccagcactgagatcattc
actcagcatgctgtgaactacatgaaagttgcctatatgccccctatccaggacattggg
cctgagcctcagcatgtccagtttattttttcaatcagcaatcagcatggaggcactttg
tttgggatctgctttaatattacagttcttccagtggacaatcaagctccagaggtattt
acaaataacttgaaagtggaagaagggggactatgcaccattacagagagccatattctg
ttgtcagatgtggacacaaaacaggagaccctccacatctaccttcagaggcagccgctg
catggaatggtagaactggatggatttcccatgaccgacggtgacaggttcacctgccag
gacctgcatatgttaaaagtcaggtatcagcatgatggctctgagactctgcaggatgac
atcctctttgcagccacagatggcattaattctttagagtttgtcctacgggtcaaggtg
ctccctgtaaatgatgagccacctatcatgaaagatggcctcattcccctaatacaatgt
ccagagggtgaggaagtggtcatcacctcagagtacatttgtgccactgatgcagacagt
gatgacatgagactgacttttatgctggctcgacagccccactatggggttgtgaggaaa
gctggtgtcgttgtggatctcttctcccaagccgacgttgtctctggagtagtgacctac
aaacatactagtggggagattggcctgactccttgctttgacagcctaactttggttatc
tctgatggtgaagctggcgtggatgtgaatgactgctgttatgatggacttcttcctcct
ccagtaccacttcatgattcctttccagtatatgaccttaacatcagtgtatttccagtg
gacaaccagccaccatccattacaattggtgccatgtttgttgtggatgagggtttctca
gctgtcattaccactaacaatttgtttgctactgaccccgacaccgcagcagatgactta
gagtttgttttggtttctcctccccagtttggttacattgaaaatatactaccttcccct
gggtttgagaagagcaacattggtataagtatagcttcatttcagctgatacacctgaaa
gccttgcatataaattatgtgcagtccaggcatatgaggacagaaccaacttcagatcag
tttatgatttatgtcactgatgggaagcatcattcagtggagaccccattttatgtcctg
atcaacccaacgaatgatgaagtaccagaattcatagcaaggaacataactgtgcaggag
ggccaaatgaaagaactggatccctctgtaatcaacgtccttgatctggatgtacctcaa
gatcatttgaggtttaccgttgtccagaaaccccagcatggattcctcattcatggagtc
tacggcaatgatgttatgagttacaaaagattcattagcagtcaccacagtcatgaacgt
cctgtgcatgacttttccatggaacttcttaagaatggaatgaggctggtgtacatgcat
gatgactctgaaaacctcactgatggttttacactccagctgtcagatgggaaacataaa
gtcctcagaaccattctggtaaaggtcatcccagttaatgatgagaaaccaatgctgagc
aagaaggatgagatagcggtgaacatgggtgaaacccgaataatttctagtgctgttctg
tcagctgaagataaagacacccccagggagagaatttactatttatttgaaagaattcca
gaaaacgggcagcttcagctcaaggtaggtagggactgggtgacgctccaaactgaaatg
aagtgcactcaggaggaaatagatatgaaccttgtgagatatgtgcatacaggagctatg
gggtccaggaaccaagacagcttcacatttcatctgtgggatggggacaacaaatctcca
ccaatggacttctacataactatcaaggatatggaaaaaggggacatagctgttttcgta
aggccatttactgtatctaagggggacagaggttttttgacaactgatgttctccttgca
attgatggaactgacaaaccagaagagctcctctatgtgataacctccccacctcagtat
ggacagatagagtatgtcagctatcctggagtccctattacaagtttcagccaaatggat
gtagcaggtcaagcagtctgctatgtccacaatagcaaggcagctgttccccgagatctg
ttcagatttatcatcagcaacggactgaagactaaccatggaacgttggagatcacgctg
gagacagtggaccaagctttgcccatagtgtctaggaacaaggggttaagattagtggaa
ggcactatggcactcctttctcctgatgtcctgcagctttcagatcctgacacttcctca
aagaaccttactttcctcttggcacagctccctcaatatggccacctatgctaccgtggg
gcagtgctgctgcatcacaatttcacccaacaagatgtggacaacatggacatggcatat
agacacggaggaggggcttcccagattgacagatttaccttcgttgcaacagataggact
aatgacggcttcatcatagatgggaaggtgcaaatggaacctgtggcattcaccattcag
gtggaccatttggacaaaactgcaccaaaaattgttcacctccgttgttcttccgatgtg
gagcgcctgaaaaatggcaattatgggatttacattactgccaggtccttgaaggcatac
gaccccgatacagaagaggataaagtcatttttaagattttacgaggtccacgttatggc
tacctggaaaatataacaacaggtggatttatccaggaaggattcagccaaaaggattta
aatggcaaaatcatactttatgtcatcaatccatcctgggaggtgaattcagacagcttg
gagtttcaagtcacagatcccaccggaaactctgctgccccccaaactctggaactgagg
tggtctcaaattgaaatgcaacaagctgagtacgaagtatgtgagaatgtgggaatgttg
tctttgaaaatcaccagatcggggcactccatagactctgcctttattgcagtgaaggtt
aatgaagtgtctgctacattgggaaaggattttactgtgactccctctaagctcattcag
tttgatccaggaatgtcaaccaagacgtggaatatagcaattacttatgacggattagag
gaagatgatgaggtctttgaagtagttctgaactcccctgtgaatgcagttcttggcacc
aggacaaaagctgtagtgaaaattctggactcaaaaggaggtcaatgcagctctttccgt
tcctctggccaaaacaagcccaatttacgggggacaggcgcattgcttccagtttcctca
gggtcctcatcgccctccaatcctggcactgttcacttggaagaaatcccgctgtcctct
tccagagtgatgatggtggatagaggggatgtgttacaggaattcaacttggtgaatctg
tcaaggatgaggcttagagctgtcagaaatggcaaaatagttcatccttcatctgtgtta
agcaatggaacccatgtggcttttaaatatcatggattggtgtctctcagagtagaggat
gacacctcatcagctaatgcaaacaaggctaacaagtcaataattaaccaagggcagaca
aagataaatgtgatatcctccaggaagacagaagtcccacaagctgataaggcagagctg
atgtctgaatcacactctagccaacaggacctggtcctctcctttccaaagagctgcacg
cctgatttagacgggctcttgcattttgaagaaggcacccaaaacttatttcagtgtgat
ggaatttcgtggaagttatggacttcagaaagcaaggatgttagcatgaaaaaatgccca
tctggatggagccatcatggcagcagctgctatttcctgatcacagaccagaaagtcact
tggaatacagctgctcgggcttgccgggagcaataccttggaagtctagcaagtgtggtc
actaaacaacacatgcagtggctgtgggacttcagtggcaggaagcccttttggataggc
tttaatgatcaagttaatcctggccattgggagtggaatggaggagaacctgtcaccttc
acaaactggagaagaagtccatctcgcttttcaaagcaaggaaagaattgtgttttggtg
cagaggcgagggaaatggcaagcaaaagactgtaggaagggtaatcggcacaactatgtc
tgctcaagaaagctgtaa
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integrated database retrieval system
