Caretta caretta (Loggerhead turtle): 125637063
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Entry
125637063 CDS
T09292
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccay03036
]
125637063 (SHOC1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125637063 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Macro
HMA
mIF3
Motif
Other DBs
NCBI-GeneID:
125637063
NCBI-ProteinID:
XP_048707079
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All DBs
Position
5:complement(113856355..113976722)
Genome browser
AA seq
2099 aa
AA seq
DB search
MFAALKYHAVDYLYENVARQKFSIDRLSFRVPPCLHQDENYHHTGVFADDKYRRPWTRVS
VVSTQKMMDISVLDQWKQSLYVEDFLEKKPISCTEFHINNELIEVVPSSNPYSQTDTEEA
YLLTKNDYKEEFTQVICVKPDYVPVLKAQDQDLYIADELVFVDNLEEYRKQLPTLHTLLA
RLKNFLVKDPLLNSKGQILTEENLFRECLTFQSNAETHENEKELHVAKEIFCRMSLNDEE
SLMLPVELESKKTTNFRQKVEIPSCLELKELLKLAPEIIADESRSEKQIKDLTANITNEI
EISKYCPTMEEVCFNQNRNPLECSEAVSYTLYPQYEVEIPLTPPCKPQRSHVNSLHAGLQ
AEPISPVGNSILLTESIKKNLECLVWQSEKYQNAVNSLLLEENQTVEPTFQHHTVTELKK
IMSVHVEAPVFSPLKSDWWIHSGLNLVLPDSLEQLSTDLGSANSLFSTEEEVFSQITQFQ
LERWLEEKSSLTNQGLLSVSAYHWDKTTNSHFSPEKKSPFPPLHLGAAPHVNICDANTSV
EWLTRQENQHSETEGPMHFLYQEKKRKDLSDSLNCKEGSFEPNSSTKSQKTLPFKQSRQC
DDDSDLLNSFIMLRSKHVFIQNEEKINLDRQKEALEIKECPEVLKQDSSAVCKATLTEKT
EQENQGSISVKIQASESQCQAYHLLEATATPVLKELMHLGILAAVNWRFATVKFDHTRFF
LKQQEKVICDIFKQGKNSEKEIMLFKHAALVHLLVTVRDLLLMCSLDTALGYLSKAKDIY
TSVLGSCLDNIWRQLEIVQYSRQKKNEISPKITELQYQMLKWVQSNTDEQNHKVLIITRM
DSDHEKAAITKTLSTVEGLKAMVLNPEKRGVLLEHNVVSSLSRCSCVIVHNQHIGADFPW
TLFSLVVEYDYTENSCWNELCKNLNITYVTFKTTLPETLVVVSGENFGCFLLEVQIPYVF
LTSEGLLNSPEILQLLESKYNITFVERSCSESLQLFGGTDRYIVVTIDERTAIIIETLEE
LNYEKSSDNIILRLVALSLQYSCCWIILYSRERLNSEYSLTGKTLHHLSLIYAALVPFSQ
KSEDFEVKVALVPGVEETALLIRQISDNILMSSKTNPHEWLDKSWLSILPSEAEKCLLTF
PCINPLVAQLLLKKGSSLKWLLLATFDQLQELLPEVPEKVLKHFCDITSLYNLNSSIPPK
SPKKTISPQEQWSCFNMTFPQASFSKSLLSNIQGDYQYSELLDNIQNSPSQSLNYYKNES
CSPLRSSERQSMLTSLLSYCGQVSCFETDHNISGQQYLPFLKNVGTEREASSSLLKQRDS
DVFSLESSHVNHEARISPPKTTKEDYDSVSSKDTEENLTIPISKDVYEILMRRESCLHDL
IEKKFGCMSLFKTIRCPLEVYRKSLKEGIEISVWMDDMTRHNADALVNVAHEHLHHIGGL
ALTLVKAGGPEIKQGSKRYIERQGTLTIGQIAVTGGGRLSCKKVIHTVGPRWSANESERC
CHLLETAIINVLKYVNTPENNIKSVAIPAVSSGVCGFPLDLCAHVMVRTIKNFVELAPLF
GWFKEIHLVNVAESTATAMRKACEELLGRSDIHALQETPPASANQLPDSITINGLCLHII
RGHIEDQQTAVIVNSVVMNDDLSRGNISRAILEKAGLSLQKEFLFELQKLPPYCEKFILT
KGYNLACKSVLHIVWSSQSSSDSRKGLKTAMSRCLFKIQEYQLPSISFPAIGTGVLNLPN
DEVADIMIDKVLSFAKEHPWKETDVYFVIHPNDSYVYKAFQTKLHSAKNKLIKDTECNKR
DYLGSRSDRQAEIENQKTGPAIELIGNCYEKLEAAKIWIEDIMQVQESHFIVIENNHIFN
LSKREHAELSHLQRFGISILEEVVDGKARLEIKGPPGAIIDAVFVIENLLCYVQENNTVK
QEELLQSEGRLETNYPPEKLRDKTRDTKMHYQISEADLYCQEFKDREKQFEKAGLCVLKQ
SSKNFQGEFRGLPYSCPEAQAEETLWSEYPSSHALDSFAPDLRLCDSVANPNEYRSLNFH
QIAGEFSGKRRPSASLSNLTEKDVLTGLGFAQVPQLKKRRLTFEKAPGRSDGQTRLKFF
NT seq
6300 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagctcttaaatatcatgcagtagactatttatatgagaatgtggcaagacag
aagttttctattgatcggttatcatttcgtgttcctccctgtttacatcaagatgagaat
taccatcatactggagtctttgctgatgataagtacaggaggccatggacaagagtttca
gttgtttccacacaaaaaatgatggatatttcagtcctggatcaatggaagcaaagttta
tatgtagaggatttcctggagaagaaaccaatttcatgcacggaattccatattaataat
gaactaatagaagttgttccaagttcaaatccctactcacagactgacacagaagaagcc
tatttacttacgaagaatgactacaaagaagaattcacccaagttatttgtgttaagcct
gactatgtcccagtacttaaagcacaagatcaagatttatatattgcagatgaacttgtt
tttgttgataatttggaagaatatcgtaaacaactacctactctgcataccctcttggct
agactaaaaaatttcttagtgaaggatcccctcttaaattctaaaggacagattttgact
gaagaaaaccttttcagggaatgtttgactttccaaagcaatgcagagacacacgaaaat
gaaaaagaactacatgtagctaaggaaattttttgtcgaatgtctttaaacgatgaggag
tcattaatgctgcctgttgaattagaatccaagaagacaacaaacttcagacagaaagtt
gagattccatcgtgcttggaactgaaagagttgttaaaattagcaccagaaattatagca
gatgaaagcaggagtgaaaagcaaatcaaagatcttactgcaaatattacaaacgaaata
gaaatttcaaaatactgtcccacaatggaagaggtttgtttcaatcaaaacagaaatcca
ctggaatgcagtgaggcagttagttacactttatatcctcaatatgaagtagaaataccg
ctaactccgccatgcaaaccacaaagatcacatgtgaattcacttcatgcaggacttcag
gcagaacctatttctcctgttggtaacagtattctgcttacagagtcaattaagaagaac
ttagagtgcctggtgtggcagtcagaaaaataccaaaatgctgtgaactctcttttgctt
gaagagaatcagactgttgaacctacatttcaacatcatacagttacagaactgaaaaag
attatgtctgtccatgtggaagctccagtgtttagcccattaaaatcagactggtggatt
cattcaggactaaatctggtattaccagattctttggagcaactaagcactgatttgggt
agtgcaaatagcctgttttctactgaagaggaagtattctcacaaattacacaatttcag
ttagaaaggtggcttgaagagaagagttcccttactaatcaaggactgctttctgtcagt
gcatatcactgggacaaaacaacaaattctcatttctcacctgaaaagaagagcccattc
cctccattacatttgggagctgcacctcatgtcaacatatgtgatgcaaatacatctgtt
gaatggctaacaagacaggaaaatcagcacagtgagacagaaggaccaatgcatttctta
tatcaagaaaagaaaagaaaagatttgtctgactcacttaactgtaaagaaggatctttt
gaaccaaacagctcaacaaaaagccagaagactctaccattcaaacagtctagacaatgt
gacgatgattctgaccttctgaacagttttatcatgctaagatctaaacacgtgttcatc
caaaatgaggaaaaaattaatttggataggcagaaagaggcactggaaattaaagaatgt
ccagaagttcttaagcaagacagttctgctgtttgtaaggctacattgacagagaaaaca
gaacaggagaatcaaggcagcatctcagtcaaaattcaagcatcagaaagccagtgccag
gcataccatctgttagaagcaacagccactcctgttctaaaagagttgatgcatcttggc
atacttgccgcagtgaattggaggtttgccacagttaaatttgatcacactagatttttc
ttaaaacagcaggagaaagtgatctgtgatatttttaaacaaggtaaaaatagtgagaaa
gagataatgttgttcaaacatgctgctctggtgcatctgttggtaacagttcgagacctc
ctattaatgtgtagcttggacacagcattagggtatttgtccaaggcaaaggatatctat
acaagcgtcttaggttcctgtttggataatatttggaggcagctggagattgtacagtat
agcaggcagaaaaagaatgaaatcagtcccaaaataacagagcttcagtatcagatgtta
aagtgggtgcagagtaatacagatgaacagaatcataaggtactaatcataacaagaatg
gactctgatcatgaaaaagctgccatcactaaaacccttagtacagtagaaggtttaaaa
gccatggttttgaatcctgagaaaaggggagttttgttagagcacaatgttgtaagcagt
ctgagcagatgttcctgtgttattgtacataatcagcacattggagctgactttccttgg
acacttttctcattagtggtggagtatgattatacagagaactcctgctggaatgagctg
tgcaaaaatttgaatattacttacgtaacttttaaaaccactcttccagaaacacttgta
gttgtttcaggtgaaaattttggctgcttccttctggaggtgcaaattccgtatgtgttt
ctgacatctgaaggacttcttaactcaccagaaatccttcagcttctagaatccaagtac
aatattacttttgttgagagaagttgcagtgaatcattacagctctttggaggtacagat
cgatacatcgtggtaacaatagatgaacgcactgccataattattgagactttggaagaa
ctgaattatgagaaatcctctgataatatcatattaagactggtggctctatcactccaa
tacagttgctgttggatcattttgtattccagagagagactgaattcagagtacagcctc
acaggaaagactctgcatcatctatccttaatttatgctgctttggttccattttcacag
aaatcagaagactttgaagtgaaggtagctcttgtgccaggggttgaagagacagcattg
ttaattcgtcagatttctgacaacattttgatgtcttctaaaacaaatcctcatgaatgg
ttggacaaatcctggctttctatcttgccatctgaggcagagaagtgcttgcttactttt
ccatgtataaaccctctagtagctcagctcctgctaaagaaggggtcttcactgaagtgg
ctgttgttggcaacttttgaccaacttcaggaactcctgcctgaggttccagaaaaagtt
ttaaagcatttttgtgacatcacttctttgtacaacctaaattcttccattcctccaaaa
tcacccaagaaaaccatatcaccccaagaacaatggagctgcttcaacatgacctttcct
caagcttcattttccaagtctttgctctccaatattcaaggagattatcagtattcagaa
ttgcttgacaacatacagaacagcccaagtcagtccttaaattattacaaaaatgagtct
tgttctcctttgagatcaagtgagaggcaaagcatgttaacatctttgctgtcttactgt
ggacaggtcagttgctttgagacagaccataatataagtggtcagcagtaccttcctttt
ctgaaaaatgtgggaacagagagagaagctagttcctcactcttaaaacagcgtgattca
gatgtattttctttggaatcaagccatgtgaatcatgaagccagaatctcaccaccaaag
accactaaggaggattacgattcagtgtccagcaaggatacagaagagaatttaacaatt
cccatcagtaaagatgtttatgaaatccttatgagaagagagagctgtctacatgacctc
attgaaaagaagtttggttgcatgtctctctttaagactataagatgtccccttgaagta
tacaggaaaagcctgaaggaaggaattgagatatctgtttggatggatgatatgacaaga
cataatgctgatgctttggtgaatgtagcccatgaacatctgcaccatattggaggcctt
gctcttaccctggtgaaagctggtgggccagaaattaagcaagggagtaaacgttacatt
gagcgccagggaactctcaccattggtcagatagcagtgacaggcggaggcaggctttct
tgtaagaaagttatccacacagtaggtccaagatggtctgcaaatgaaagtgagagatgt
tgtcacttgcttgagacagccattataaatgtcctgaaatatgttaatactccagagaat
aatataaagtctgttgcaatccctgcagtgagctcaggagtttgtggcttcccactagat
ttatgtgctcatgtaatggtacggactataaagaattttgttgagctggctccattattt
ggctggttcaaagaaatccacttggtgaacgttgctgaatccacagctacagcaatgaga
aaggcctgtgaagagttgctgggcaggagtgacatccacgcactgcaggagactccacca
gcttcagcaaaccagcttccagattccatcacaatcaatggtctctgcctacacatcata
agaggacacattgaagatcagcaaactgcagttattgttaattctgtggtcatgaatgat
gatctctcaagaggaaacatttcaagagcaattctggaaaaagcaggcctatctcttcag
aaggaatttctgtttgagttacaaaaacttcctccatactgtgagaaattcatattgaca
aaaggatacaatcttgcctgcaagtctgtgctccacatagtatggtcctcacaaagcagc
agtgattcacgcaagggactaaaaactgcaatgtcaagatgtttgtttaagattcaggag
tatcagcttccctcaatttccttccctgcaattgggactggagtgttaaatttgccaaat
gatgaagtggcagatattatgattgacaaagttttaagctttgcaaaggaacatccttgg
aaggagacagatgtgtattttgtgatccatccaaatgacagttatgtctataaggctttc
caaaccaagttacattcagcaaaaaacaaactgataaaagacacggaatgcaacaaaagg
gattatttggggtcacgctccgacagacaagctgaaatagagaatcaaaaaactggacca
gccattgaacttattgggaactgctatgaaaaactggaagcagcaaaaatatggattgaa
gacataatgcaagtccaggaaagtcactttattgttatagaaaacaatcacatttttaac
cttagcaaaagagagcatgcagaactttctcatctgcagcgtttcggtatatccatattg
gaagaagtggttgatggaaaagcaagattagagattaaaggtccccctggtgccataatt
gatgcagtgtttgtgatcgaaaacttactgtgctatgtgcaagaaaataatacagtcaaa
caagaggaactgctgcagtcagagggccgactggaaactaattatcctccagaaaaactc
cgagacaaaacaagggataccaaaatgcattaccagatctcagaagcagacttatactgt
caggaattcaaggaccgagaaaaacagtttgaaaaagctgggctttgtgttctcaagcaa
agctctaagaattttcaaggagaatttagaggcttgccatatagctgtccagaagctcag
gctgaggagacgctttggagtgaatatccatccagccatgcattggattcatttgcacct
gacctccggctctgtgattcagttgcaaacccaaatgaataccgtagtctgaattttcac
caaatagctggagagttttcaggaaagagaaggcccagtgcatcattatcaaacttaaca
gaaaaggatgttttaacaggtttaggctttgcacaagtaccacagctcaaaaaaaggcga
ctaacatttgaaaaagcccctggaagaagtgatgggcaaactcgtcttaaattcttttga
DBGET
integrated database retrieval system
