Caretta caretta (Loggerhead turtle): 125638146
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Entry
125638146 CDS
T09292
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccay03000
]
125638146 (SOX6)
Transcription factors [BR:
ccay03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125638146 (SOX6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
125638146
NCBI-ProteinID:
XP_048709442
EnsemblRapid:
ENSCECG00000017848
LinkDB
All DBs
Position
6:24059925..24509041
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AA seq
836 aa
AA seq
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MPSSSEVLAGVVGENRTEEWKNSHYIRMSSKQATSPFACAADGEEAMTQDLASRDKEEGN
NDHHVASHLPLHTLMHNKPHSEELPTLVTTIQQDADWDSVISAQHRMESESNKLCSLYSF
RNTSTSPHKPDEGGRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYA
AQLASMQVSPGAKMPSTPQAPNTTGALSPTGMKNEKRGTSPITQVKDEVAQPLNLSARPK
TAEPVKSPTSPTQSLFPASKTSPVNVPNKSGIPSPIGGTLGRGSSLDILSSLNSPALFGD
QDTVMKAIQEARKMREQIQREQQQQPPPHGVDVKLPSMNTMGLNNCRNEKMPVRIDAITG
RICIRTVDTERTRFENLGPQLTGKPSEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQY
YCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNIS
KILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQ
LMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTAPSPQMTSDCSSTSASPEPS
IPVIQSTYGMKTDSGSLAGNEMINGEDEMEMYEDYEDDPKSDYSSENEGHEAVSAN
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaagttctgaagtgctggctggtgtggtaggagaaaacaggacagaagagtgg
aagaacagccattatataagaatgtcttccaagcaggccacctctccatttgcctgtgca
gctgatggagaggaagcaatgacccaggatttagcatcacgagacaaggaagagggcaac
aatgatcatcatgtggcctcccatctgcccctacacaccctaatgcacaacaaacctcac
tcggaggagctaccaactctggtcaccaccatccaacaagacgccgactgggacagtgtt
atctcagcccagcatagaatggagtcagagagtaataagttatgttccctatattccttc
cggaatacctctacctcaccacacaagcccgacgaaggaggtcgcgatcgcagtgagcta
atgaccagtgttaattttggaactccagaacgccgcaaaggaagccttgccgatgtggtg
gacacattgaaacagaagaaactagaggaaatgaccaggactgaacaagaagactcatct
tgcatggaaaaactactttctaaagactggaaggagaaaatggaaagactaaatacaagt
gaactccttggagaaattaaaggtacgccagaaagcctggcagaaaaagagcgacagctc
tctaccatgatcacccagctgatcagtttacgggagcagctcctggctgcccatgatgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagaacagattgcaagacaacaacagcaacttttgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagaggacgttggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacttacaagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactctatgca
gctcagctggccagcatgcaggtttctcctggagccaagatgccttctactccccaggca
ccaaacacaacaggcgcactctcacctactgggatgaaaaacgaaaagcgagggaccagc
cctataactcaagtgaaggatgaagtagcacagccactgaatctctcagcccgacccaaa
actgctgaacctgtcaaatccccgacgtcaccgacgcagagcctcttcccagctagtaaa
accagtccagtgaatgtgccaaataaaagtggcatcccgagccctattggagggacattg
ggaagaggatcctctttagatatcctttccagtcttaactcacctgccctatttggggac
caggacacagtcatgaaagccatacaggaggctcgaaagatgagagagcagatccagagg
gagcagcagcagcagccgccgcctcatggtgttgatgtaaaactgccctccatgaatacc
atgggtctaaacaactgcaggaatgaaaagatgccagtgcggatagatgccatcactgga
aggatatgcattagaactgtagacacagaaagaacacgctttgagaatttaggcccacag
ttaacagggaaacccagtgaagatggaaaactgggcccaggagtcattgaccttacaagg
ccagaagatgcagagggaagtaaagcaatgaatggctctgcagctaaactacagcagtat
tattgttggccaacaggaggtgccactgtggctgaagctcgagtctacagggatgcacgg
ggccgagccagtagtgaaccgcatatcaagcgaccaatgaacgctttcatggtttgggca
aaggatgaacgcagaaaaattctccaagcttttcctgacatgcacaactccaatatcagc
aaaatcctaggctctcgctggaaatccatgtctaatcaagagaaacaaccttactatgag
gaacaggcacggctaagtaaaatccatctagagaagtaccctaactacaaatacaaacct
cgaccaaaacgcacctgtattgttgatggcaagaaactgcgtattggagaatataaacaa
ctgatgaggtctcgaagacaagagatgaggcagttttttactgtgggacagcagcctcag
attccaatcaccacaggaacaggtgttgtctatcctggtgctattaccatggcaactacc
gcaccatcacctcagatgacatctgattgctctagcacctctgccagtccagagcccagc
atccctgtcattcagagcacttatggtatgaagacagacagcggaagccttgctggaaac
gaaatgataaatggagaggatgagatggaaatgtacgaggactatgaggatgatcccaaa
tcagactatagcagtgaaaatgaaggccacgaggctgtcagtgccaactga
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