Caretta caretta (Loggerhead turtle): 125638792
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Entry
125638792 CDS
T09292
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04140
Autophagy - animal
ccay04142
Lysosome biogenesis
ccay04148
Efferocytosis
ccay05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
125638792 (VPS39)
04140 Autophagy - animal
125638792 (VPS39)
04148 Efferocytosis
125638792 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125638792 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccay04131
]
125638792 (VPS39)
Membrane trafficking [BR:
ccay04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125638792 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
SAM_CEP-1_C
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
125638792
NCBI-ProteinID:
XP_048710884
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All DBs
Position
6:63248428..63281569
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AA seq
884 aa
AA seq
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MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDIGEVTSSESGCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTC
DLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFYELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKGALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIVYVASNHF
VWRLLPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFLYSTWVLRDFPDDGLKIFTEDLPEVESLPRDKVLNFLIESFKSLAIP
YLEHIIHVWEETGSEFHNCLIQLYCEKVQGLMKEYLCSFPADKIAVPAGEEEGELGEYRR
KLLCFLEISSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALIIYVHILKDTKMAEMY
CHKHYDRSKDGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAVVVHYFCSKEVSTADT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgatcctggagaagctgccgctgcagatagactgt
ctggcggcttgggaggaatggctgcttgttggcaccaaacaagggcatctcctcctttac
aggatcaggaaggatataggagaggttacatcatcagaaagtggctgttgcaacagattt
gaagtgacactagagaaatccaacaagaacttctcaaaaaagattcagcagattcatgtt
gtttcccaatttaaaattctggtcagtttgttagaaaataacatttatgtccacgacctg
ttgacatttcaacaaatcaccacagtctctaaggcaaaaggtgcatctctgttcacgtgt
gacttacagcactctgatacaggggaggaggtactgaggatgtgcgtggcagtgcggaag
aagctacagctgtatttctggaaggacagggagttctatgagctacagggggacttcagt
gtgccggatgtgcccaagtctatggcatggtgtgaaaattctatctgtgtaggtttcaag
agggactattatctgataagggtggatggaaaagggtccatcaaagaactgttccccaca
gggaagcagcttgaaccattggtggctcccttagcagatggaaaagttgcagttggtcaa
gatgatctaacggtagtacttaacgaagaagggatctgtactcagaaaggtgccttgaat
tggacagacattcccatagctatggaacatcagcctccatacatcattgcggtgctacca
aggtatgtggagattcgcacttttgaaccccggctgctggtgcagagtattgagctgcaa
agaccacgcttcatcacctctggaggtacgaatattgtgtatgtggccagcaatcatttt
gtttggcgtctccttccagtctccatagcaacccagatccagcagcttctccaagacaag
cagtttgaattggctctgcagttggcggaaatgaaagatgattcagatagtgaaaagcaa
caacagattcatcacattaagaacctctatgcctttaacctcttctgccagaagcgcttc
gatgaatccatgcaggtttttgccaagctcggtacagatcccactcatgtgatgggtctg
tatcctgacttgctgcccactgattacaggaaacagttgcagtatcctaatcctctgccg
gtgctctctggggctgagctggagaaagcacacttagcactcatagactatctaactcag
aaaagaagtcagctggtaaagaagttaaatgactccgaccaccagtccagcacctcaccc
ctcatggaaggaacacccaccatcaaatccaaaaagaagttgctccaaatcattgacacc
accttgctcaagtgttacctacatacaaatgtagctctggtagcaccattgctacgactg
gagaataatcactgccacatagaagagagtgagcatgtactgaagaaggcacacaagtac
agtgagctgataatactgtatgagaagaaagggctgcatgaaaaagctctgcaggtgcta
gtggatcaatcaaagaaagccaactctcctttgaagggccatgaaaggacagtgcagtat
ctacagcatttgggcacagaaaacttgcacttggtgttcctatattccacgtgggtgctc
agagactttcctgatgatggattgaagatatttacagaagaccttcctgaagtagaatcc
ctgcctcgagacaaagtactcaacttcttgatagaaagctttaaaagcctggctatccct
tacctggaacacatcatccatgtttgggaggagacaggttcagaattccacaattgtctg
atccagctgtactgtgagaaggtgcaaggattaatgaaggaatatctctgctccttccct
gcagataaaattgcagtgcctgctggagaggaggaaggggagctgggggagtatcggaga
aagctgctctgttttcttgagatttctagctgctatgaacctagtaggctcatcagtgat
ttcccctttgatggtctcctagaagaacgtgccttgctgttgggtcgtatggggaagcat
gaacaagccctcattatttatgtccacattctgaaggataccaaaatggctgaaatgtac
tgccataaacactatgacagaagcaaagatggcaacaaagatgtgtatctgtctctactc
cggatgtatctatccccacctagtgtacattgcctggggccaatcaagatggagctgttg
gagcctcaagccaatctccaggctgccctgcaggttttagaattgcaccacagcaaatta
gatactactaaggctataaacctgctcccagcaaatactcaaattagtgagattcgaatc
ttcctagaaaaagtccttgaagaaaatgcccagaagaagcgattcaaccaagtactaaaa
aatcttcttcatgcagaattcctgagggttcaggaggagagaattttgcatcagcaggtg
aagtgtatcatcacagaggaaaaagtgtgcactgtgtgtaaaaagaagataggaaatagt
gcatttgcccgataccctaatgcagtagttgtgcactacttctgctccaaagaagtcagt
acggcagatacctga
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