Caretta caretta (Loggerhead turtle): 125638818
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Entry
125638818 CDS
T09292
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125638818 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125638818 (PATL1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125638818 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
125638818 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
125638818
NCBI-ProteinID:
XP_048710930
LinkDB
All DBs
Position
6
Genome browser
AA seq
791 aa
AA seq
DB search
MCWYREMRQSPGTGSDRQTRRPSFGHESLEECPLDEDEDAFQTLGEEDEDIDQFNDDTFG
AGAIDDDWQEAHERLAELEDKPATARELEDGAVSDEMDLLGHHEENLAERLSKLVIENEL
EDPAIMQAVQTQPPVQQPGGLNSSIWDGSAVLRRIRGPLLTQEVPSVSVLEYALPQRPSQ
GQEDERDLSERALPRRSSSPVIGSPPVRAVPIGTPPKQATVPNFNQQILCPKPVHIRAPM
QQRYPSPYSERMSPNQLCNVPNSSLLGHPFPPSVTPVFTHLQRAQLLGGAQAGRMSPSQF
ARVSGLVGSPLTSMNPKLLQGRVGQMMSPASGFRAFFGAPPPPAPPPSQQQHPPCPGSHL
QNLRPHPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSAGDRVGHRSSHQEQLRKD
PYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFQKLEKVSAAEEMHGDGPKKERT
KLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKR
RQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALMEERKQKICDMYDNLRGKMPGQERP
SDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMATARNLPFLIKKDAQDEVLLCLLRP
FSLVLYHLPSGTVTSLLQQLANLPQSATAPAPANLHLAAVLQNKFGLSLLYLVLSRGEEL
QNSSAATELMQDNQWTELMFMATRELLRIPEAALAKPVSTPSNLLSLFSRYVDQQKLNVL
ETKLQLVQGIR
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtgctggtatagggaaatgagacaatctccaggaacgggttcagacagacaaactcgg
cgccccagctttgggcatgagtccctggaggagtgtcctctggatgaagatgaagatgcc
tttcagaccctgggcgaggaggatgaagatatcgaccagttcaatgacgacacgtttgga
gctggtgctattgatgacgactggcaggaggcacatgagcggctcgcagaactggaagac
aagcctgcgacagctagagagctggaagatggggcggtcagtgatgagatggacctgctg
gggcaccatgaggagaacctggctgagaggctgagcaagctggtcatcgagaacgagctc
gaagatccagccatcatgcaggctgtgcaaacccagcctccagtgcagcagccaggaggc
ctcaactccagcatctgggatggatctgcagttctgaggcgcatccgaggaccgcttctc
actcaggaggtgccctcggtgtctgtgctggaatatgctctgcctcagagaccatcacag
ggccaggaggatgagcgggacctctcggagcgggcactgcccaggcgttcgtcctcccca
gtcattggaagcccccctgtcagggctgtccccatcggcaccccaccaaagcaggccacc
gtgcccaacttcaaccagcagatcctgtgtccgaagcctgttcacatccgggccccgatg
caacagcgttatccttccccctacagcgagaggatgtctccaaaccagctctgcaatgtc
ccgaattcctccctgctgggccacccgttccctcccagcgtcactcccgttttcacccac
cttcagagagcgcagcttctaggaggagcacaggctggacgaatgtctcccagccagttt
gctcgtgtctctggactcgttggcagccccctcacatccatgaaccccaagttgcttcaa
ggcagagttgggcagatgatgtctccagccagtgggttccgtgccttttttggagcgcca
ccgccccccgcgccacccccatcccagcagcagcaccccccatgtcctgggtcccacttg
cagaacctaaggcctcaccctcagatgttcagaccagatacaactcaccttcacccgcag
catcggcggctcttacatcagagacagcagcagaacaggaaccagcaccgtagtctgaat
ggctcggcaggggaccgagtgggccaccggagcagccatcaggagcagctgcggaaggac
ccctatgccaatctcatgttgcagcgggaaaaggactgggtatcaaagatccagatgatg
cagttgcaaagcactgacccttacctggatgacttctactatcagaattacttccagaag
ctggagaaagtgtcagcggcagaggagatgcacggcgatggccccaagaaagaacgtact
aaactcatcacaccccaggtggccaagttagagcatgcctacaagccagtgcagtttgag
ggctcgctggggaagctcacagtctccagtgtaaataacccccggaaaatgattgacgcg
gtggtgacctcccgcagtgaggacgatgagacgaaggagaagcaggttcgagacaagaga
cgtcagacccttgtcaccattgagaagacatacagcctcctcctggatgtggaagactat
gagaggcgctacctcctgagcctggagggggagcggccagccctgatggaggagagaaag
cagaagatctgtgacatgtatgacaatctgagggggaaaatgcccggccaagagaggccg
agtgacgaccactttgtgcaaatcatgtgtatccggaaagggaagcgtatggttgcccgg
atcctgccctttctgtccacggagcaagcggccgacatactcatggcaacagccagaaac
ctgcccttcctgatcaagaaggatgctcaggatgaggtgctgctgtgcctgttgaggcca
ttctctctcgttctctatcatcttccgtcggggacggtcaccagccttctgcagcagcta
gcgaacctacctcagagcgccacggcgccagcacctgccaacctgcacctcgcagctgtg
ctccagaacaagtttggcctgtccctgctgtacttggtcctgagtcgtggggaggaattg
cagaattccagtgctgctacggagctaatgcaggacaaccagtggacggagctgatgttc
atggcaacccgagagcttctgcggatccctgaagcagcgctggcaaagccagtatccacc
ccctctaacctgctgtcccttttttctcgctatgttgatcagcagaagctgaacgtgctg
gagacaaagttgcagttagtgcaggggatacggtag
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