Caretta caretta (Loggerhead turtle): 125638858
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Entry
125638858 CDS
T09292
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04382
Cornified envelope formation
ccay04510
Focal adhesion
ccay04512
ECM-receptor interaction
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125638858 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125638858 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125638858 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125638858 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125638858 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125638858 (COL4A1)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125638858 (COL4A1)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125638858 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125638858
NCBI-ProteinID:
XP_048711048
LinkDB
All DBs
Position
1:complement(106985052..107209194)
Genome browser
AA seq
1674 aa
AA seq
DB search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NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgtggcgaggcgtggggctggtgctggccgcgctcctgctcagcgaggagccc
gacgaggcgtccgcggcggcttgttctggctgtggaaaatgtgactgcagtggagtaaaa
gggcaaaaaggtgaaagaggtttgcctggactacaaggtgtaattgggtttcctggaatg
caaggacccgaaggtccacctggaccatcaggaattaagggtgatactggagaaccaggg
ctaccaggaacaaaaggaacaaggggcccaccaggttcatcaggatatccaggaaaccca
ggtcttcctggcatccctggacaagatggcccaccaggtccacctggtatcccaggttgc
aatggcacaaagggtgaaataggtcctgttggtcctccaggtttacctggattggatggg
agaataggacctccaggatctcctggaattaagggagacccaggtgaagtgattgggttc
ttaccacaaaatgtgctaaaaggcgaaagaggttatcctggcctccctggactaccaggt
acaccaggattgccagggctccaaggccccatcgggccaccagggattacaggagttcca
ggtcccccaggcccaccgggacttccgggtgagaagggtcatatgggcttgagttttcaa
ggaccaaaaggtgataagggtgaacgaggagtggggggccctccaggtccacaaggaact
gcctcacaacacaaagagaaaggaagtgtaatcatatatggagagaagggtgaaccaggt
gaaaaaggtgataaagggattcgaggatttgcaggctcaagtatcaaaggggaaaaaggt
gaacctgggaaacctggctcacgaggaaaacctggaaaagatggcgagagaggaccaaaa
ggacaacctggtgaggatggtaggtttggtgttccaggactaccaggtgaccctggtcct
aagggagacaagggcgcacaaggtcttccaggacttccaggaagagtaataggtactgga
acagtggatgcttatggtgaaaaaggagacattggtcctccaggttttccaggattaaaa
ggtgaacaaggtctaaaaggtttaccaggtgtacaaggacacccaggtcctccaggttta
cctagcccagggatcacaggtccacctggcttccctggtgagagaggtgaaaagggtgac
caaggtcctccaggactctctctgcatggatcagctggaagggatggttttccagggcct
ccaggtcccccaggacctccaggacttccaggcataacaaacggaatcatggaatgtcag
cctggagaacctggtgatcgaggtcttcctggaccccaaggacaacctggattcttagga
gagagaggagataaaggtgataaaggtgatggttgtgccttgtgtgatgtatctgggctt
cctggacatcccgggccacaagggccaccgggtccaccaggctttccaggacagccagga
gccaaaggagataggggtatgcctggactcactggtcttgaaggggttcctggttctcca
ggtgtgccaggactgattggtagcccaggagcaaagggagagcccggagacatttacttt
gattctaatctaaaaggtgataaaggagatcctggattccctgggcaaccaggtgttcct
ggaagagaaggaaggccagggagagatggcttgccaggtctccagggccctaaaggggca
tcgggtacatttgggctgaaaggagaacgtggtccccctggctcaagtggatttcctggg
gtacgtggtgaaagaggccagcctggtcttccaggggtaggacctgctgggccagctggt
gacaaaggagataaaggctttccaggaaacccaggtgtaccaggccgcccagggccaaag
ggtgaagcaggacaagtcattcctctgcctggtcccccagggtcagatggtctcccaggg
ccacctggcttctctggagtccaaggtgacaggggggatcctgggtttccaggaaaacct
ggacttccaggagaaaaaggtgctgttgggcagccaggaataggattccctgggcctcct
ggccctaaaggtttcccaggtcagcctggcacaacaggtcagccaggggctcaagggcgt
cctggctttgatggtttaccaggcacaccgggtttacctggtcaaaaaggtgaccctgga
gtgggcctcccgggtcctaaaggattaccagggctacagggtccagcaggcttccctgga
gaaaaaggaaatgctggtttgcctggcttacgaggagagcaaggatttccaggtgtacct
ggtcagccaggaatccaaggtgacccaggttcagctggattagcaggttcaccaggtgcc
ccaggtgtgccaggaataggccctgtggggccccctggacctgcgggagaacaagggcca
cagggaccaacaggacatcctggaacaaagggagagaggggctacccaggtctcccagga
ctagatatgccaggaccaaaaggagataagggtagccctggccagagtgggctaccaggt
ctggtaggtttacctggcgtacctggtcaacaaggaaaaggtggactttcaggctttcca
ggcatcaaaggagaaatgggagttatggggacccctggaatcccaggttctcccgggcca
ctaggaaatccaggattacggggtgaaaaaggtactccaggttttccgggtacgtcaggg
ccacgaggtgatcctggtctcaaagggagtaaaggtgaagtaggtctaccaggagaacca
ggaaccataaagataacggacatggaaaatatgaaaggtcaaaagggagacccaggagaa
aaaggacaagaaggaataataggagaaaaggggaaaacaggggattatggtgtaccagga
atgccagggaaggatggtgaacatggcttcccgggacttccaggacgaaaaggtgatcaa
ggccctccaggatacccaggtgacccaggatttccaggacaaaaagggtcaattggagaa
atgggtttgccaggaacacctggagaaaaaggtgtgccaggtgtgccaggctcacaaggt
atgccaggataccctggattacaaggtgaaaaaggagacaaaggagagtcgggaattcca
gggattggcattccaggttctccgggtgagaagggagaacaaggaaggtcaggtgttcca
ggcttccctggtgaaaaaggtgaaaagggtagcacaggaattccaggaatgcctggtcat
ccaggtcccaaaggattacctggcattgcaggatatccaggcaacccaggtagccacgga
gaaaagggtgaaaaaggactctctggcttgggtggtattccaggtttaaaaggagaagca
ggtgaacctggttctgaaggtccctctggtgtccctggtcagaaaggtgaacaaggttat
gatggaataccaggtttgcctggaccaaagggtgacccaggtattccaggtagagggctt
ccaggatttcctggtgcaaagggagaaaaaggtgcaaaaggtgatgtgggttttccagga
tccccaggaagcccggggattcctggttcaaaaggagaagcaggatttgttggtccgcaa
ggtcttccaggccaacagggcattcccggattaccagggagatcaatggaaggtcctaaa
ggagacagaggactcccaggtcaacctggactttcaggtctaccaggtccagagggacca
ccaggatctccaggccttgaaggagccaaaggagaaaaaggaaacacgggttggcctgga
acacctggaagacttggaatcaaaggtgatctgggattccaaggcattcctggtagtgct
ggtttaccaggaggtattggtcaaaagggtgatatgggacctccaggagttcccgggttt
caaggtccaaaagggtcttctggcttcccaggtctcaagggagaacaaggtgaccaaggg
tttcctggctctaaaggtttacaaggtccaccaggtcctccaggtccttatcagcttctt
aaaggggaaccaggtttacccggtcctgtcggaccagttggtctaaaagggctccctgga
cttccaggtccaaaaggacagcaaggagtgacaggacctgagggtatacctgggcaacct
ggtgttccaggatttgatggtcaacctggtcagaaaggagaacctggtccttctggtccc
ccaggtccgcgaggagccagaggtccaccaggccctgagggtttaccagggtcaatgggc
ccaccaggcacaccatctgtcgctcatggcttccttgttaccagacacagccaaaccatt
gaagaaccagaatgtccacctggaactaaactgatgtactacggctactccttactttac
gttcaaggcaacgaaagggcacatggtcaggatttgggcacagcagggagctgtcttcgt
aaatttagcactatgccattcttgttctgcaacatcaataatgtatgcaactttgcatca
aggaatgactattcttactggctgtctactcctgaacccatgccaatgagtatggctcct
atcactggtgacaatatcaggccattcatcagtagatgctctgtgtgtgaggctcctgcc
atgataattgcagttcacagccaaacagttcaaataccattgtgccctgaaggctggatg
tcactttggattggttactcctttgtaatgcataccagcgctggtgctgagggttccgga
caagctctggcatctccaggttcctgtctggaggagttccgcagtgctcccttcatagaa
tgccatggtcgtggaacttgtaactattatgcaaatgcttacagcttttggcttgccact
atagagagaaatgagatgttcaagaaacctactccttcaactctgaaagcaggggacttg
cgctcaaacgttagccgttgtcaagtctgtatgagaagaacataa
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