Caretta caretta (Loggerhead turtle): 125639395
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Entry
125639395 CDS
T09292
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03008
Ribosome biogenesis in eukaryotes
ccay03013
Nucleocytoplasmic transport
ccay03015
mRNA surveillance pathway
ccay05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125639395 (NXF1)
03015 mRNA surveillance pathway
125639395 (NXF1)
03008 Ribosome biogenesis in eukaryotes
125639395 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125639395 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125639395 (NXF1)
03009 Ribosome biogenesis [BR:
ccay03009
]
125639395 (NXF1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125639395 (NXF1)
mRNA cycle factors
Stress granule specific factors
125639395 (NXF1)
Ribosome biogenesis [BR:
ccay03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
125639395 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_9
Luteo_coat
UBA_4
Motif
Other DBs
NCBI-GeneID:
125639395
NCBI-ProteinID:
XP_048712281
LinkDB
All DBs
Position
7:complement(33713837..33723928)
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AA seq
633 aa
AA seq
DB search
MAEEGKGGYSEHDDRVGGTGGGGGFAGRRRKGRGPFRGKMYSEGNHRSWNRGVAGPSPSG
QLEEGDGDVPMSDAHDSLRTRYAPYGPRLNRRGDDWHSRGRGSATNIHVTVKRDLTPQDR
SSSASRNSSRRRWYKVTIPYGKKYDKSWLLSSLQNLSSVPFTPVEFHYDQSRAYFYIEDM
TTANALKQLSRKITDRDNYKVVLIVNHSSPPQSVQKELKPEEIEQLKVTMSKRYDGSQQA
LDLKNLRTDPDLVAQNIDVVLNRRNCMQAVLQIIEENIPELLSLNLTSNKLYQLDDLAEL
AQKATNLKILNLTRNELKSECELDKVKGLKLEELWLDGNPLCNNFRDQSSYVSSIRLRFP
KLLRLDGHELPPPIVFDVEAPTTLPPCKGSYFGSDDLKVLVLRFLQQYYSVYDSGDRQGL
LDAYHDGACCSLSIPFLSQNPSRSILSEYFKGSRNVKKLKDPTLRFKLLKHTRLNVVAFL
NELPKTQHDINSFVVDVCAQTNTLLCFAVHGVFKEVDGKSRDVVRGFTRMFIAVPAGITG
LCIVNDQLFVRKANTEEIRKAFVMPAPTPSSSPVPTLSAEQQEMLQAFAMQSGMNVEWSQ
KCLQDNDWDYSQAAQVFTQLKTEGKIPDVAFLK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaagggaaaggggggtacagcgaacatgatgaccgtgtgggcggcacaggt
ggtggtgggggctttgctgggaggaggaggaaaggtcggggaccgttccgaggcaagatg
tacagtgaggggaaccaccgctcgtggaaccggggtgtagcaggtcccagcccttctggt
cagctggaggagggagatggagatgttcccatgagcgatgcccatgacagtcttcgaacc
agatacgctccctatgggccacggctgaataggcgaggtgatgactggcacagccggggc
cggggaagtgccaccaacatccatgtcacagtgaaacgagatctcacgccccaggaccgg
agtagcagtgccagccgcaacagcagccggaggaggtggtacaaggtcacaattccctat
ggaaagaagtatgacaagtcatggcttctgagctcgctccagaacttgtccagtgtccct
tttactccagtggagttccactacgaccaaagccgggcctacttctatattgaggacatg
acgacagccaatgcgctcaagcagctgtcccgcaagatcacagatcgagacaattacaag
gtggtgctaattgtcaaccactcatctccaccccagtctgtccagaaggagctgaagcca
gaggagattgagcagctgaaagtcaccatgagtaagagatatgacgggtcccagcaggcc
ctggacctgaagaaccttcgcacggacccagacctggtggcacagaacattgatgtggtg
ctgaaccggcggaactgcatgcaggccgtgctgcagatcattgaagagaacatcccggag
ctgctctcactgaatctcaccagcaacaagctgtaccagttggatgacctggcggagctg
gcccagaaagccaccaatctcaagatcctcaatctgacccgcaatgagctgaagtctgag
tgcgagctggacaaggtgaaggggctcaagctggaggagttatggttggatggaaaccct
ctgtgcaacaatttccgggaccagtccagctacgtcagctccatccgactgcggttcccg
aagcttctgcgcttggacggccatgagctcccccctcctattgtctttgatgtggaagca
cccaccaccctccccccctgcaagggcagctacttcggctcggatgacctcaaggtgctg
gtgctgcgcttcctgcagcagtattactctgtatatgactctggcgacaggcaggggctg
ctggatgcctatcacgatggggcctgctgttccctcagcatcccattcctctcgcagaac
ccctccaggagcatcctgagtgaatacttcaagggtagcaggaatgtgaagaaactcaag
gaccccaccctgcgcttcaaactgctcaagcatacgaggctgaacgtggtggccttcctc
aacgagctgcccaagacccagcatgacattaactcctttgtggtggatgtctgtgcacag
acgaacaccctgctgtgctttgctgtccatggagtcttcaaggaagtggatggcaagtcc
cgggatgtagtgagaggcttcacccgtatgttcattgctgtgccggctggtatcacaggg
ctgtgcatcgtgaacgaccagctgtttgtgcgcaaagcgaacacggaagagatccgcaag
gccttcgtgatgccagcacccacgccctcatccagccctgtgcccacgctgtcagctgag
cagcaggagatgctacaggccttcgccatgcagtctggcatgaatgttgagtggtcccaa
aagtgcctccaggacaatgactgggactacagccaggcagcccaggttttcacccagctc
aagacggaggggaagatcccagacgtggcatttctcaagtga
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integrated database retrieval system
