Caretta caretta (Loggerhead turtle): 125639530
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Entry
125639530 CDS
T09292
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccay04121
]
125639530 (PDZRN3)
Enzymes [BR:
ccay01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125639530 (PDZRN3)
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125639530 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
Sina_ZnF
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
zf-rbx1
PDZ_Tricorn
TRAF3_RING
zf-TRAF
RING_XB3-XBAT31
GMC_oxred_C
Motif
Other DBs
NCBI-GeneID:
125639530
NCBI-ProteinID:
XP_048712809
LinkDB
All DBs
Position
7:complement(11597816..11798017)
Genome browser
AA seq
1060 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVRCRRIS
TKELNHVLPLKSLILKLDIKCEHRARGCGRVVKLQQLGAHAERCDYSPARCRHPGCGAVL
NLRDVDAHMRESCEARPGGVCEQGCGLVLTHRELRAGGHCCLEALQGRNRCLQAKVGGLE
KELKKEALRAGKREKSLLAQLSAVQLELQMTALRYQKKFTEYSARLDSLSRSLAAPPCQG
EETKALTLVLHRDSGSLGFNIIGGRPCMDNQDGSSSEGIFISKIIDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHDQAVEAFKTAKEPIVVQVLRRTPRAKIFSPSHESHLVDMGTQTDI
TFEHIMALTRMGSPPPPVSVLDPYLLPEDHSSVHEYYDPNDYMGSIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDIGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLTSEESKNVSLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNADDHTTSSNTL
GSQKKLVYSHDTLGSGDMQFSNESFISADCTDTDFLSIPVDECERFRELLELKCQVKSAN
PYSLYYHNSALDISKSDHESVDRELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWM
LHNSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLQISPDNSLY
RTAEGSSCQGNEGAVAYNVSQKNLLPSSESHESGSANYLSSPKDPDLDKQLESKERKASD
GSKSPAQKLAGSYISPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMC
KDFNSSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggaccgcttcagcggggaggtggaccccgacttcaagtgcaacctg
tgcaacaaagtcctggaggacccgctgaccaccccctgcggccatgtgttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgcccggtgcgctgccggcgcatctcc
accaaggagctcaaccacgtcctgccgctcaagagcctcatcctcaagctggacatcaag
tgcgagcaccgcgcccggggctgcgggcgggtggtgaagctgcagcagctgggcgcccac
gccgagcggtgcgactactcgccggcccgctgccgccacccgggctgcggcgcggtgctg
aacctgcgcgacgtggacgcccacatgcgggagagctgcgaggcccggccggggggcgtc
tgcgagcagggctgcggcttggtgctgacccaccgggagctgcgcgccggcggccactgc
tgcctggaagccctccagggccgcaaccgctgcctgcaggcgaaggtcggcgggctggag
aaggagctgaagaaggaggcgctgcgggccggcaagcgggagaagtcgctgctggcccag
ctctcggccgtgcagctggagctgcagatgacagcgctgcgctaccagaagaagttcacc
gagtacagcgcccgcctcgactcgctcagccgcagcctggccgcgccgccctgccagggt
gaagagactaaagcactgactcttgtccttcatcgtgactctgggtctcttggatttaat
attattggtggccggccatgtatggacaatcaagatggctcatctagtgaaggaattttc
atatcgaaaataattgacagtgggcctgctgccaaagaaggagggctgcagattcacgac
aggattattgaggtaaatggaaaagatttatcgaaagcaacacatgaccaggcagtggaa
gcattcaaaacagccaaagagcccatcgttgtacaggtcctgaggagaaccccacgcgct
aagatcttcagtccttctcatgagtctcatctggtagatatgggcacccagaccgatata
acctttgaacacatcatggctctaaccaggatgggatcccctcctccaccagtctcagta
ctagatccatacctcttacctgaggatcattcatcggtgcatgaatactatgacccaaat
gactacatgggaagcattcatcaagaaatggacagagacgagttagaattagaggaagta
gacttgcatagagtgaacagccaggacaagctcggccttactgtgtgttatcgaactgat
gatgaggatgacattggtatttatgttagtgagattgatcccaacagcattgctgcaaaa
gatggtcgcctgcgggagggagatcgcattattcaaattaatggcatagaggtacagaac
cgagaagaagctgtggcacttctaaccagtgaagagagcaagaatgtctccttacttgta
gcaagaccagaaatccagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttacacatggacatgctagaggaacagcaccaccaggcaatgcagtttactgcc
agcatgcttcagcagaagaagcacgaagaagatggaggcaccacagacactgctactatc
ttatctaaccagcacgagaaggacagcggtgtgggccgcacagatgagagcacgcgaaat
gatgaaagctcagagcaggagaataatgccgatgatcacactacttcctctaacacttta
ggaagccagaagaagctggtctacagtcatgacactctaggaagtggtgacatgcagttc
agcaatgagtcatttatctcagccgactgcacagacacagacttcctcagcatcccagtg
gatgaatgtgagagattccgcgaactgctggagctgaagtgccaagtcaagtctgccaac
ccatacagtctgtattatcataacagtgccctggatataagtaagagtgaccacgaaagc
gttgacagggagctggagatgctgaacgaggaactgcggaatattgagctagagtgtctg
aatatcgtgagagctcataaaatgcaacagctgaaggatcaataccgggagccctggatg
ctccataacagcggattccgtaactacaacacaagcatcgatgcacgcaggcacgagctc
tcagacattacagagctccctgagaaatctgacaaggatagctcgagtgcgtataataca
ggcgagagctgtcgaagcacaccgctcacactgcagatttcccctgacaattcactgtac
agaactgcagaaggcagcagttgtcaaggtaatgagggggcagtggcatacaacgtctcc
cagaagaatttgctacctagctcagaaagtcacgaatccggctctgctaactatctctcg
tcacctaaagatccggacctagacaagcagctggaaagcaaagagagaaaagccagtgat
ggaagcaaaagcccagctcagaaactggctggctcctacatctctccatatcatcactct
ccctataaacatgctcatatcccagcccacgctcagcactatcagagctacatgcagcta
atacaacagaaatcagctgtggaatatgcacagagccaaatgagcctagtgagtatgtgc
aaagactttaattcttcaagccagagtgaacccaggatggaatggaaagtcaaggtcagg
agtgatggaacccgctacatcacaaagaggccagtcagggacaggctgctgagagaacgt
gccataaagattaaggaagagcgcagtggtatgacgacagatgacgatgctataagcgag
atgaagatgggccgctattggagcaaggaggaacggaagcagcatttggtgaaagcgaag
gagcagaggaggcggcgtgagtttatgatgcagagcaggttagattgtttaaaggaacag
caaggtgcagaagaaaagaaagagatgaacatcattgaactgagccacaaaaaaatgatg
aagaagaggaataaaaaaatctttgataattggatgacaatccaagaactcttaacccat
ggcacaaagtcccccgatggcacaagagtgtacaattccttcctgtcagtgactactgta
taa
DBGET
integrated database retrieval system
