Caretta caretta (Loggerhead turtle): 125639712
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Entry
125639712 CDS
T09292
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125639712 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125639712 (EXOSC1)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125639712 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
125639712 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
125639712
NCBI-ProteinID:
XP_048713294
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Position
7:complement(121687948..121693800)
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AA seq
195 aa
AA seq
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MAPPVRYCVPGERLCSLEEGAAGSGTYTRHGYVCAALAGCLVKTSEDGALPVVSVVRDAE
SQLLPDVGAIVTCKVCSINSRFAKVHILYIGSTPLKSAFRGTIRREDIRATEKDKVEVYK
SFRPGDIVLAKVISLGDMQSNYLLSTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHSK
ELRKVARVQPEFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggccccgccggtgcggtactgcgtccccggcgagcggctctgcagcctggaggagggc
gcggcgggcagcgggacctacacccggcacggctacgtgtgcgccgccctggctggctgc
ctggtgaagacgagcgaggacggagcgctgccggtggtgtctgtggtgagagatgccgag
tcccagctcttgcccgatgtaggggccatcgtgacgtgcaaggtgtgcagcattaactcc
cgctttgccaaggtgcacatcctgtacatcggctccacaccgctgaaatccgccttccga
ggcaccatacggagagaagacattcgagccacagagaaagacaaggtggaagtttacaag
agtttccgtcctggagatatagtcctggctaaagtgatctccctgggggacatgcagtcc
aactacctgctgagcacagcagagaacgagctgggcgtggtggtggctcacagtgaagca
ggggcccagatggtgccaatcagctggtgtgagatgcagtgccccaggacacactccaag
gagctccgcaaggtggcccgagtgcagccggagttcctgcagacctag
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