Caretta caretta (Loggerhead turtle): 125640357
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Entry
125640357 CDS
T09292
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125640357 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccay03021
]
125640357 (TAF5)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125640357 (TAF5)
Transcription machinery [BR:
ccay03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125640357 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
125640357 (TAF5)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125640357 (TAF5)
STAGA complex
125640357 (TAF5)
TFTC complex
125640357 (TAF5)
SAGA complex
125640357 (TAF5)
SLIK complex
125640357 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
eIF2A
RAB3GAP2_N
LisH_TPL
VID27
Motif
Other DBs
NCBI-GeneID:
125640357
NCBI-ProteinID:
XP_048714809
LinkDB
All DBs
Position
7:complement(118066866..118089847)
Genome browser
AA seq
786 aa
AA seq
DB search
MAALPEEPAEVVVKPDPEGGVPPQPPPVPSPAAPPTTAPAEGEAAGTPGSGGEAAPPKPA
PPGPAASPAPTDRQTLLAVLQFLRRNNLHESEDILRREARLLGEEVAAAALSPSGPGAQG
TPGGETDAAGGEALLSRVAAAASGAAGGSVAVGAAAAPGAAAAVVAVPPGKVGGGVPVED
QPDVSAVLSAYKQQGDPALYEEYYSGLKHFIECALDCHRAELSQLFYPLFVHMYLELVYN
QHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY
QLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFF
GLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKRESMGSKSKKQDPNAPPQTRIPLPELKD
SDKLDKIMNMKEATKRVRLAPECLPSICFYTFLNAYQGLTAVDVTDDSSMIVGGFADSTV
RVWSVTPKKLRSVKSAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPD
RNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWAT
DHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKGPIHS
LAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHADTVYALRFSRDGEILASGSMDNT
VRLWDAVKVFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVIHIHFTRRNLLLAS
GAYSPQ
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctacctgaggagccggctgaagtggtggtgaagccggacccggaggggggt
gtcccgccgcagccccctccggttccctcgcccgccgctccccccaccacggcgccggcg
gagggggaggcggcggggaccccggggagcggaggggaggccgctccccccaagccggcc
cccccgggtccggccgcctcccccgcccccacggaccggcagaccctcctggccgtgctc
cagttcctgcgccgcaacaacctccacgagtccgaggacatcctgcgccgggaggcccgg
ctgctgggggaggaggtggccgcggctgccctcagcccctcgggacccggcgcccagggg
acccctggtggggagacagacgctgccgggggcgaggcgctgctgagccgggtcgccgcc
gccgcctctggagcggccggagggagcgtcgctgttggtgccgctgcagcccccggcgcc
gccgccgctgtcgtcgcggtaccgccagggaaagttggaggaggtgttcctgtagaagac
cagccagatgtgagtgcagtgttgtctgcctacaaacagcagggggacccagcgctgtac
gaggaatactacagtggactgaagcacttcattgagtgtgccctagactgtcatcgggct
gaattatcccagttgttttatcctctctttgtgcatatgtatttggaattggtctacaac
cagcatgagaatgaagcaaagtctttctttgaaaagtttcatggggatcaagagtgttat
taccaagatgacctgcgtgtattatctagtttaactaaaaaggagcacatgaaagggaat
gagaccatgctggatttccgaacaagcaagtttgtgctgcgcatttctcgtgactcttat
caactcttgaagagacaccttcaggaaaaacagaacaatcaaatctggaacattgttcag
gaacatctgtacattgatatctttgatggaatgcctcgcagtaaacaacagatagatgct
atggtgggaagcttggcaggggaggctaaacgggaggctaataaagcaaaggttttcttt
ggcttattaaaagaaccagagattgaagtgcctttggatgatgaagatgaagagggggag
aatgaggaaggaaaaccaaagaagaaaaaacctaaaagagagagcatgggatcaaaaagt
aaaaagcaagaccctaatgctcctccacaaaccagaattcctcttcctgaactgaaagac
tctgacaagctggataaaataatgaatatgaaggaagccacaaaacgtgtgcgtcttgct
ccggaatgtttgccttccatctgtttctacacattccttaatgcctaccagggtcttact
gcagtggatgtcactgatgactctagcatgattgtaggaggctttgctgactccactgta
agagtatggtctgtgacaccaaaaaagctacgcagcgtgaaatcagcagcagatctcagt
ctcatagacaaagaatcagatgatgtcttggagaggatcatggatgagaaaacagcaagc
gagttgaagattttatatggtcacagtggacctgtctatggtaccagcttcagtcctgat
aggaactacctcttgtcctgttcagaggatggcactgtcagattgtggagccttcaaacg
ttcacttgcctcgtgggatataaaggacacaactatccagtgtgggatacacagttctct
ccctatggatattactttgtatcaggtggacatgacagagtggctcgcctgtgggctacg
gatcactatcagcctttacggatatttgctggccatcttgctgacgtcacatgtacccgg
tttcaccccaactccaactatattgccacgggctcagcagacaggactgtacgactctgg
gatgttctgaacgggaactgtgtaagaatcttcactggacataagggaccaattcattca
ttggcattttctcctaatggacgattcctggctactggagcaacagatggaagagtgctt
ctgtgggatattggccatggtttgatggtgggagagttgaaagggcacgctgatacagtc
tatgcactcagattcagtagagatggggaaattttagcatcaggttcaatggataacaca
gtccggctgtgggatgctgtgaaagtatttgaagacttagaaactgatgattttactaca
gccactggacatataaacctgcctgaaaactcacaggacttgctgttgggtacatacatg
accaaatcaaccccagtcatacacatccattttacccgcagaaacttgctactagcttca
ggagcatatagtccacaataa
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