Caretta caretta (Loggerhead turtle): 125640586
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Entry
125640586 CDS
T09292
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125640586
Spliceosome [BR:
ccay03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125640586
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
TPR_17
TPR_MalT
TPR_11
Motif
Other DBs
NCBI-GeneID:
125640586
NCBI-ProteinID:
XP_048715272
LinkDB
All DBs
Position
7:32145068..32172271
Genome browser
AA seq
749 aa
AA seq
DB search
MAAEGLEAAGSSSCGGAGTERALGGGSERGESGLDIGGPNQDLLPKPPSDSTSKQEDTKA
AQGCNGVNAEANMSGLKDPCANEENCQYPASEEERAAVATPVAAEEVSLSYPLEFEKYWK
AAQENPHDFTAWTELLQYVEQENHIFAARKAFDAFFARYPYCYGYWKKYADMERRFDFSK
ETEEVFERGLQSIPLSMDLWIHYISYLQATLDMNLPESIQKIHSVFESAVAAAGMDFRSD
KLWEMYVEWEKEQGDLKAITTIYDRVLSTPTQLYSHHWEKFKEHVMSNSPKDILSAEELL
WLQSKITTETVQKSVETEVEEVPPGEDLPPGVEVKPETGADAQVPRFSASYPNDADFDSY
SELTSAVRGDLDQDKIRELVISIRQQVYTQNEAEVSKRWNFEEGIKRPYFHVKPLERAQL
KNWRDYLDYEITNGSHERTIVLFERCVIACALYEEFWIKYTKYLENHTVAGARSVFQRAC
GYHLPRKPNIHLLWAAFEEKQGDLEEARRILKSYEESIPGLAMVRLRRVSLERRHGNLEA
AEALLQEAIRDNEGMPLASFYAIKLARQVLKVQKNLIKARKVLMEALEKDPENAKLYTNL
LEIEFSADVRQNEGNTMNCFERALSSGLPEETKIVFSQRRVEFLEDFGSSIHSLLTAYDE
HQKFLKHQMTRKRAPENGCTDEPEDKKLRAEDSPGMVNPAVTTAGIAPLMGGDMSTNPAA
AYNYSTWYQNYGVYGYQNPWNYSQYYSQS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgaggggctggaagcggcggggagctcaagctgtggcggagccgggaccgag
agggccctcggcgggggaagcgagaggggggagagcggcctggacattggcggtcccaac
caagacttgctcccaaaaccgccaagtgacagtaccagtaagcaggaagacaccaaagca
gcgcaagggtgcaatggagttaacgccgaagccaacatgtcagggctcaaggacccgtgt
gcaaatgaagagaactgtcaatatcctgcctccgaggaagaacgtgcagcagtggctacc
cctgtggcagcagaagaagtctccctctcataccctctggagtttgagaagtactggaag
gcagctcaggagaatcctcatgacttcacggcatggaccgaactgctgcaatatgtggaa
caagagaatcacatctttgcagcacgaaaagccttcgacgccttttttgctcgctacccc
tactgctacggctactggaagaagtatgcagacatggagaggcgcttcgacttcagcaag
gagacagaggaggtgttcgaacgagggctgcagtctatccccctcagcatggacctctgg
attcattacatctcttacctacaggccaccttagatatgaaccttcctgagtccatacag
aagatccacagtgtgtttgaatcagccgtggctgccgcaggaatggacttccgctcagac
aaactgtgggagatgtatgtggagtgggagaaggagcaaggtgacctgaaggccatcaca
accatttatgaccgagtgctctccacaccaacccagctgtacagccaccactgggaaaag
ttcaaggaacacgtgatgagcaactcccccaaagacatcctgtctgcagaggagctgctc
tggttgcaatccaagatcaccacggagacagtacagaaaagtgtggagacagaggtggag
gaggtgccacctggggaagacctgcctccgggggtggaagtaaagccagaaacaggagct
gatgcccaggtaccacgcttctcagcctcctacccaaatgatgcagactttgacagttat
tctgagctgacatctgctgtcaggggagacctggaccaggacaagatccgggagctcgtt
atctccatccggcagcaagtgtacacccagaatgaggcagaagtcagcaagcgctggaac
tttgaggaagggatcaagaggccatactttcatgtcaagccgctggaaagagcacagctg
aagaactggcgcgactacctggactacgagattaccaatggctcccacgagcgcaccatt
gtgctctttgagcgctgcgtcattgcctgtgccctctacgaggagttctggatcaagtac
acgaaataccttgagaaccacactgtggctggggccaggagtgtcttccaacgagcttgt
ggctaccacctccccaggaagcccaacatccacctcctgtgggctgcatttgaagagaag
caaggagacctggaggaggcacgtcgcatcttgaagtcttatgaggagtccatcccaggg
ctggctatggttcggctgcggagagtgagcctggagcggcgacacggcaacctggaggca
gctgaggctctgctgcaggaagccatacgggacaatgaggggatgcccctggcttcattc
tatgccatcaagctggcccgacaggtgctgaaagtgcagaagaatctaataaaggctcgg
aaggttctcatggaagcgctagagaaagacccggaaaatgcaaagctctacaccaacctc
ctggagatagagttcagcgccgatgtcaggcagaatgaaggcaacaccatgaactgcttt
gagagagcgctgagcagtggcctccctgaggagaccaagattgtcttctcacagcgcaga
gtggagttccttgaggactttgggtccagcatacacagcttgctgacagcgtatgatgaa
caccagaagttcctcaaacaccagatgaccaggaaaagagcccctgagaatggctgcact
gatgaaccagaagacaaaaagctgagagctgaggattctcctgggatggtcaaccctgcg
gtcactactgcaggcatcgcaccactgatgggtggagatatgagtaccaatccagcagcc
gcttataactacagcacctggtatcagaactacggcgtctacgggtatcaaaatccatgg
aactacagccaatattactctcagagctga
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