Caretta caretta (Loggerhead turtle): 125641029
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Entry
125641029 CDS
T09292
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125641029 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125641029 (SMG7)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125641029 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
125641029 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
ubiquitin
Ferlin_C
Motif
Other DBs
NCBI-GeneID:
125641029
NCBI-ProteinID:
XP_048716292
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All DBs
Position
8:54425993..54529374
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AA seq
1204 aa
AA seq
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MEGKLYYLLVICEKERAWLIFQDSRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLV
TDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQL
LQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYR
NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN
LQKALSKALESRDEVKTRWGVSDFIKAFIKFHGHVYLSKGLEKLSPLRERLEEQFKRLLF
QKAFNSQQLVHITVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFISFLGVLCKC
PLQNDFQEESWGAYPLPAVKVSMDWLKLRPSVFQEAVVDERQFIWPWLISLLNSFQPHEE
DLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGLQRRVRQQRLIFTGKW
IADNQPRLIQCENEVGKLLFLTEIPELLLEDPSEAKESLVLQETSIAEPLSTDGSPGLKS
VLSTGRNLSNCDTGEKPMVTFKENIKPREVNREQGRIYPPKDVGRERRDYSKGIAATKND
GKKDNKRKNETKKCSLEKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASNS
QFIPIHHPGAFPPLPSRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGTFLQPTAHSSA
GNQVQGGKQSHIPYSQQRPSGPGPMNQGPQQSVPPSQQPLTSLPAQATAQSASQLQVQAL
AQQQQSPTKAVQALRKSPPHHSGFQQYPQADSSKHLWNPPQVQGPLGKIMPVKQPYYLQA
QDPLKLFEQSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKMPEFYWDSSYGMADNRVVM
AQQANMDRRGKRPQGVFRPDQDTVPRMAFEDPKSSPLLPPDLLKSLAALEEEEELILSNP
PDLYPALLGPLASLPGRSLFKSLLEKPSELMSQSSSFLSLTGFSLNQERYPNSSMFNEVY
GKNLNTSTKAEVTPSMAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPS
SPPTHNHNSVPFSNFGPIGTPDNRDRRIADRWKTDKPAMGGFGLDYLPATSSSSESSWHQ
TSTPSGTWATHGPAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGPM
NPPH
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggagggtaaactttattacttgctggtgatatgcgagaaggaaagagcctggcttatc
tttcaggactccaggcaggcagaagtcctgaaggctgacatgacagattcaaagctgggt
ccagctgaagtctggacatccagacaggctctgcaggacttataccagaaaatgctagta
actgatctggagtatgctttagacaagaaagtggaacaggacctctggaatcatgctttt
aagaatcagatcacaacacttcaggggcaggcaaaaaaccgagcaaacccgaatcggagt
gaagttcaggcgaacctttctctgttcctagaggcagctagtggtttctacacacagtta
ttacaggagctgtgcacagtgtttaatgtagacttaccctgccgtgtgaagtcctcccag
ctgggaattatcagcaataaacagacgcacaccagcgccattgtgaagccgcagtctagc
tcctgctcatacatctgccagcactgccttgtccacctcggagacattgctcgctacagg
aatcagaccagccaggcagagtcctactatagacatgcagctcagcttgttccctccaat
ggtcagccttacaatcagttggctattttagcttcctccaaaggagaccacctgaccaca
attttctactactgcagaagcattgctgtgaagttccctttcccagctgcctccactaat
ctacaaaaagcactttctaaagcactggaaagtcgggatgaggtgaagactcgatggggg
gtgtctgacttcatcaaggcgtttattaagttccatggccatgtatatctgagtaagggc
ttggagaagctgagccctcttcgagagaggctggaggaacagttcaagaggttgttattc
caaaaagccttcaactctcagcagttagttcatattactgtcatcaacctgtttcaactg
catcatctgcgagattttagcaatgaaactgaacagcatagttacagccaggatgagcag
ctctgctggacacagctacttgccctcttcatttcctttcttggagtcctgtgcaagtgt
ccactgcagaatgacttccaggaggagtcttggggtgcatacccgcttcctgctgtaaag
gtctcgatggactggctgaaacttaggcccagtgtcttccaggaggcagtggttgatgaa
agacagttcatttggccatggctgatttctctgctaaacagcttccagccccatgaggaa
gatctttccagcactaatgctaccccacttccagaggagtttgagttgcagggattcttg
gctctgagaccctcattcaggaacttggatttctccaaaggccaccaggggattacagga
gacaaagaagggctgcagcgacgggtacggcagcaacgactgatcttcacaggaaaatgg
attgctgacaaccagccaaggctgattcagtgtgaaaacgaagtaggaaaactgttgttt
ttgacagaaatcccagagttgttgctagaggaccctagtgaagccaaagagagtctcgtc
ctacaggaaacatccattgcagagccactgtctacagatgggagcccaggactcaaatca
gttctgtccactggcagaaatcttagcaactgtgacactggggagaaaccaatggtcaca
ttcaaagagaacattaaaccacgagaggtaaaccgagagcaagggcgaatctatccacct
aaagatgtgggtagggaaagacgggactatagcaaaggaatagcagccactaaaaatgat
ggaaagaaagacaacaagagaaagaatgaaaccaagaaatgcagcttggagaagatgcag
gaggcaggaaagcagaatgtggcagtgcaggtaaaatctcagactgagatgcggaaaact
ccagtgtccgaagccaggaaaacaccagtaactcagactccaagccaggcaagcaactcc
cagttcatccccattcatcacccaggagccttccctcctcttcccagtcggccagggttc
ccacctccagcatacgttatacctcctcctgtggctttctccatgagctcaggttacacc
ttcccaggtggtgtttctgttccaggaacctttcttcagcctacagctcactcctctgca
ggaaaccaggtgcaaggtgggaaacagtcccacattccttacagccagcagcggccctct
ggaccagggccaatgaaccagggacctcaacagtcagtaccaccttcccagcaacccctt
acatccttaccagctcaggcaacagcccagtctgcaagccaattacaggtccaagctctg
gcccagcaacaacagtcccctacaaaagctgtgcaggccctaaggaagagcccaccacac
cactctggattccagcagtatccacaggcagactcatcaaagcatctctggaatcctcct
caagtccaaggcccactgggaaagatcatgcctgtaaagcagccctattatcttcaggcc
caggaccctctaaaactgtttgaacagtcattacagcctcctgtgatgcagcagcagcct
ctggagaaaaaaatgaagcctttccccatggagccatataaccacaacccctcagaagtc
aagatgccagaattttattgggactcctcctatggcatggctgataatagggtagtgatg
gcacaacaggctaacatggatcgcagggggaagcgaccacaaggagtcttccgcccagac
caggacactgtgcccaggatggcttttgaggaccccaagagctcccctctgcttcctccg
gacctgttaaagagtctggctgccttggaggaggaggaagagctgattttgtctaatcct
cctgatctttacccagctctgctggggcctctcgcctctcttcctggacgaagcctcttt
aagtccctactagaaaaaccatcggagctgatgtctcagtcatcttctttcctgtccctc
actggcttctccctaaaccaggaaagatatccaaacagcagcatgttcaatgaggtatat
gggaaaaacctgaataccagcacaaaagcagaggtcactccctcaatggcccatcaggag
acgtcactatattctctctttgaagggacgccctggtctccctcccttccagcaagctca
gatcattcaacaccagccagccagtctcctcattcctccaacccaagcagtttgccaagc
tcccctccaactcataaccacaattctgttccattctccaactttggacctattgggacg
ccagacaacagggacaggaggattgcagaccgttggaaaacagataaaccagcaatggga
ggatttgggctggactatctcccagcaacatcctcctcctcggagagcagctggcaccag
accagcactcccagcggcacctgggcaacccatggccccgctatggaggattcttctgct
gtgctcatggagagcttgaagtccatctggtccagttccatgatgcatcctggaccgtca
gccctggagcaactgttaatgcagcagaagcagaagcagcaacgtggacaaggccccatg
aatccaccacactga
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integrated database retrieval system
