Caretta caretta (Loggerhead turtle): 125641419
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Entry
125641419 CDS
T09292
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03440
Homologous recombination
ccay03450
Non-homologous end-joining
ccay04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125641419 (RAD50)
03450 Non-homologous end-joining
125641419 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
125641419 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccay03032
]
125641419 (RAD50)
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125641419 (RAD50)
DNA replication proteins [BR:
ccay03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
125641419 (RAD50)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
125641419 (RAD50)
BRCA1-C complex
125641419 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
125641419 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
DUF2703
AAA_24
AAA_13
Motif
Other DBs
NCBI-GeneID:
125641419
NCBI-ProteinID:
XP_048717287
LinkDB
All DBs
Position
8:15421361..15461023
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGHSFVHDPKVANETDVRAQIRLQFRDVNGELTAVQRSMVCTQKGKKTEFKTLEGIITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGRALKQKFDEIF
SATRYIKALETLRQVRQKQSLRVKECQTELKYLKQNKEKAREIQDHLSNREAQLAASKEN
VKSIENRLDPLKNRLTEIEQNLAKVVRLDNEIKALDSRKRQMEKDNQDLQQKMEKVFQGT
DDQLRDMYQNHQRTVKEKERRLTDCQRELDRASKECQRFNREKSELLVEQGRLQLQADRH
QQDIRTRDSLIQTLAALLELDGFERTPFNERQINSFHKLVKERQEREAETASQLMREFAE
KETMKQKQIDEIRDKKTGLEKIIDLKSDIQNSKQLELKNVKYELNQLEESSDRILELDPE
LIKAECELDKAEKNSNVEALELEVQKLQNEKANLDKVLRKLDQEMEQLNLHTTTITQMDM
LTKDKVDKEEQIRKIKSRHIDELTSLLGYFPNKKQLEDWLHAKTREINQTRDKLAQLNKE
LASAEQNKNHTSIELRKKEEQLSNYEDKLFDVCGSQDFDSDLYKLQDEIEKTSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTESELQDVISDLQSKLRLAPDKLKSTESELK
RREKKRDEMMGLKPIRQTIAELKEKDIPDLRNKLQNVNRDIQRLKNDVEEQETLLGTVMP
EEESAKACLQDITLMERYQTDLRDVERKIAQQANKLQGVDLGRTVIQVSKEKQEKKHLWD
TVTGKIELNQKLKQDQQTQIQQLKSTVNELKAEKLQISSNMQRRQQLEDQTVELSTGVQS
LYREIKEAKDQLFPLEATLEKLQRERVDLINKKNTSNKITQEKINEIKEKVKNIHDYVKE
IEKYIQGGKEDYKKQKESELDEVKTQLSDCEKQKEKINKEMGTIRQDIDTQKIQERWLED
NLTLRKRNEELKEVEEERKQNLKEMGEMKVPQLKNERQRLEEKIEDLKRNHSLALGRQHG
FEEEIIRFKKELRESQFKDAEEKYREMMIVMRTTELVNRDLDMYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSISSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgataagatgagcatccttggagtgaggagttttggggtagaggacaaa
gacaaacaagttatcactttctttagtcctttaaccattttggtggggccaaatggtgca
ggaaaaacgactatcattgaatgccttaaatatatttccactggagatttccctccaggc
accaaaggacactcatttgttcatgatccaaaggttgctaatgaaacagatgtcagagct
cagattcgactgcagtttcgtgatgttaatggagagcttacagctgttcagcgatccatg
gtttgtactcagaaaggcaagaaaacagagtttaaaactcttgaaggtatcattaccaga
acaaagcatggggaaaaggtcagtctcagttccaagtgtgcagaaattgaccgagagatg
atcagcgctcttggtgtttccaaatctgtgattaacaatgtcattttctgtcatcaagaa
gaatccaactggcccttaagtgagggaagggccctgaaacaaaaatttgatgagatcttc
tcagcaacaaggtatattaaagcattggaaactcttcgtcaggtacgtcagaagcaaagc
ttgcgggtaaaagagtgtcagacggaactgaaatatctaaaacagaataaagaaaaagca
cgtgaaattcaagatcatcttagtaatagggaagctcaactggctgcttctaaggaaaat
gtaaaatctattgagaatcgacttgatcctctaaagaaccgtctcacagaaattgaacag
aatcttgcaaaagtagtgagacttgacaatgagattaaagctctggacagcaggaaaagg
cagatggaaaaagataaccaagatttgcaacagaagatggagaaggtttttcaaggaaca
gatgaccaactaagggatatgtaccagaaccatcagagaacagtaaaagagaaggaaagg
agattaacagactgtcaacgtgagctggatagagcaagcaaagagtgtcagagatttaac
agagagaaatcagaattacttgttgaacaaggtcgtcttcagctacaagcagatcgtcac
cagcaggacatccgaactagggattcgttaatccagactttggcagcactgttggaatta
gatggttttgaacgaacaccttttaatgaaaggcaaattaacagttttcacaagcttgtg
aaagagagacaagaaagagaagcagaaactgccagtcagttaatgagagaatttgcagaa
aaagaaacaatgaaacaaaaacagatagatgaaataagagataagaaaactggactggaa
aaaatcattgacctgaagtcagacattcaaaatagcaaacagcttgaactgaagaatgtg
aaatatgaactgaatcagttggaggagtcttcagacaggattctggaactggatccggaa
ctcatcaaggctgaatgtgaactagataaggctgagaagaacagcaatgtggaagctctt
gaattggaggtacagaaacttcagaatgagaaagcaaacctggacaaggtccttcggaaa
ttggatcaagagatggaacagctaaacttgcataccacaacaatcactcaaatggatatg
ttgacgaaagacaaagtggacaaagaggagcagatcagaaaaataaaatctagacatatt
gatgaattgacctcattgctgggatattttcctaacaaaaaacagcttgaagattggctt
catgctaaaactagagagattaatcagacaagagacaagcttgcccaacttaataaagaa
ctagcttcagcagaacaaaataaaaatcataccagtattgagttaagaaaaaaagaagag
cagttgtccaattatgaagacaaactttttgatgtttgtggaagccaagattttgatagt
gatctgtataaacttcaggatgaaattgaaaagacttcaaagcagcgagctatgcttgct
ggagccacagcagtttattcacagtttattacacagctgacagatgagaaccagtcatgt
tgtccagtttgtcagagggtctttcaaacagaatcagaactgcaagatgtaattagcgat
ctgcagtccaagttacgtcttgctccagataaactgaagtcaacagagtctgagcttaaa
agaagagaaaagaagcgtgatgaaatgatggggcttaaaccaataaggcagaccatcgct
gaacttaaagaaaaggacataccagacttaagaaacaagctacagaatgtaaaccgagat
attcagcgcctaaagaatgatgtagaagaacaggaaactctcttaggtacagttatgcct
gaggaggaaagtgccaaagcatgtttacaagatataacacttatggaaaggtatcagact
gatctcagggatgttgaacgaaaaattgcacagcaggccaataagctgcaaggggtagac
ttaggtcgaactgttatacaagtaagcaaggaaaaacaagaaaaaaaacacctgtgggat
acagttactggtaaaattgagttaaatcaaaaacttaaacaggaccagcagactcagatc
cagcagctaaagagtacagtgaatgaacttaaagcagagaagctacaaatttccagtaat
atgcagcgtcgacaacaactggaagatcagactgtagaattgtccactggggttcagtct
ttgtacagagagatcaaagaggcgaaggatcagctatttcctttggaagcaactttagaa
aaacttcagcgggagagagtagatctaatcaacaaaaagaacacaagtaacaaaataaca
caagagaagataaatgagatcaaagagaaagttaaaaatatccatgactatgtgaaagaa
attgagaaatatattcagggaggaaaagaagactataaaaagcaaaaagagtctgaactt
gatgaagtaaaaactcaactatctgactgtgagaaacagaaagaaaaaataaataaagaa
atgggaacaattagacaagacattgatactcagaagattcaggaaagatggctagaggat
aaccttacattaagaaaaagaaatgaagagctaaaagaagttgaagaagaacgaaagcaa
aatttgaaggagatgggggaaatgaaagttccacagctgaaaaatgaacgacaacgtctg
gaggagaaaatagaggatttgaaaagaaatcacagtttggcattaggtcggcagcatgga
tttgaggaagagatcattcggtttaagaaagagcttcgagaatctcagttcaaagatgcg
gaggaaaaatacagagaaatgatgattgttatgagaacaacagagctggtaaacagggac
ctagacatgtactacaaggcacttgataaagcaataatgacatttcacagcatgaaaatg
gaagaaatcaacaaaatcattcgtgatctttggcgaagcacctacagagggcaagatatt
gaatatatagaaattcgttctgatgcagatgaaaatgtttcagcatctgataaaaggagg
agctacaattatagagtagtcatgataaaaggagatactgctttggacatgcgagggaga
tgcagtgctgggcaaaaggtgcttgcttccctcattattcgtcttgctctggcagaaaca
ttctgcctcaactgtggcattcttgcactggatgaacctaccaccaatcttgatcgagag
aacattgagtctcttgcacatgctctggtggagataataaaaagccgctcgcaacagcgc
aactttcagcttcttgtcataacacatgatgaagattttgtggagcttttgggccgttct
gaatatgtggagaaattctacaggataaaaaagaacattgaccagtgttctgagattgtg
aagtgcagtatcagttccttaggttcctatgttcattag
DBGET
integrated database retrieval system
