Caretta caretta (Loggerhead turtle): 125641492
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Entry
125641492 CDS
T09292
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like isoform X1
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccay04121
]
125641492
Enzymes [BR:
ccay01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125641492
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125641492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
Crescentin
PML_CC
Pex19
ApoLp-III
Motif
Other DBs
NCBI-GeneID:
125641492
NCBI-ProteinID:
XP_048717490
LinkDB
All DBs
Position
8:108283450..108307588
Genome browser
AA seq
698 aa
AA seq
DB search
MATTKTRPCLDGTMALTFMSLQELIREDFLTCKICYDLYTVPKILPCLHSYCQHCLEPLV
RDGALQCPECRLQTDVPGGASSLKTNFFINSLLELFQIKHNRDLACTVCSDAQKILTATA
RCLDCKDFLCQSCTQGHCCSRLTLHHKVVKLEEFLAGEYDAEMRLLQELCCQDHQQEALR
FFCDTCSAPICRDCRMLDHFQHKVVSMANAVQRERPSVEQLIDSLAGTITCISEQEKAVE
ETIDKLKTSGENIKERITKYVDDIISYLLAQKEAVLGELSAFLTQQMEGCRLVKEELQSQ
RDKAISTREFSQRVLYVGKDYEILHLEGMIRNRIQELQTYIPRKLESQIPELAIAWDQPE
MLSEAALFSLVFPREQPEGDMETVFEPDSEASASPSEESEDDPDLPLDSEDQEDSCPGSE
ESAPDTPDKNPSCCSRRSKRPKRVCTFEVDQCWSQAKPNITGIAVLPHAGGILLLDQEND
EIKQYSAGGHFQQSIPLPDSDGVFCGISLCGDVLACSSDSFLFFLTLEGKFLRKLLLRGS
ESSYAITSYEDSYIAVSEGTLCSISLYSPSGHCVGRVAPTDYHGGKFLFIAVNDWEEFIV
SDFIKKQIVIIEKSGLILNVLKTSHSLLTKPFSVCVDVSSNIFVVDQLKVIKFSPDGETG
EVVLSNQSRLKRPRVLAVDDGGRLVLVQEDGYVHIYCF
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacaaagacgaggccttgtttggatgggacaatggctctaaccttcatgtcc
ttacaagaattaatcagggaggatttcctgacctgtaaaatctgctatgatctctacaca
gtgccaaagatccttccatgtctgcacagttactgccagcattgcctggaaccactagtg
agggacggagccctccagtgtcctgagtgccggctgcaaacagatgtcccaggaggtgcc
tcaagtctgaaaaccaacttcttcatcaacagcctcctggagttattccagattaaacac
aacagggatttggcctgcacagtctgctcagatgcccagaagatcttgactgccactgcc
cgttgcctagactgcaaggatttcttgtgccagtcctgcactcagggccattgctgctcc
cgtctcactcttcatcataaggtggtgaagcttgaggagtttctagctggggaatatgat
gctgagatgaggctgctgcaggagctgtgctgccaggaccaccagcaggaagctctgcga
ttcttctgtgacacctgcagtgctcccatctgcagggactgccgtatgctagaccatttc
cagcacaaggtggtctctatggcaaatgctgtgcagagggaaaggccttctgttgagcag
ctaattgacagcctggcaggaacgataacatgcatctctgagcaggaaaaagctgtggag
gagacaatagataagttgaaaacatcaggagagaacataaaggagaggatcaccaaatac
gtggatgacattatctcctacctcctggcccagaaggaagccgttctgggtgagctgtct
gcttttctaactcagcaaatggaaggttgtcgcctggtgaaagaggagctccagagccaa
agagataaagcaatcagcaccagagagttctctcaaagggtcctctatgtgggaaaggac
tatgagatcttacacttagagggcatgataaggaatcggattcaggagctccagacatat
atcccacggaaactagagagccaaatccctgaattggccatagcctgggatcagccggaa
atgctgtcagaggcagcactcttcagtctagtgtttcccagggaacaacctgaaggagac
atggaaactgtttttgagccagatagtgaggcatctgcttcccccagtgaggagtctgag
gatgacccagacttgcccttggactcagaagaccaagaagactcctgtccaggctctgaa
gagagtgcccctgacactcccgacaagaacccctcttgttgcagcaggcgcagtaaaagg
cctaagcgcgtgtgcacttttgaggtagaccagtgctggtcccaagcaaagcccaatatc
acagggattgctgttctgcctcacgctggtggcattctcctgttagatcaggagaatgat
gagataaagcagtacagcgctggtgggcactttcagcaatcaatacctctgccagactca
gatggcgtcttctgtggcatttcgctctgtggagacgtcctagcttgctcttcagattcc
ttcctcttcttcctgacccttgagggcaagtttctgcgcaagttgctgctaaggggatcc
gagtcttcctatgccatcacctcctatgaggactcctatattgcagtgagtgaaggcaca
ctctgctccatctccctttacagcccttcaggacactgcgtgggcagggtggcacccaca
gattaccatggggggaagttccttttcattgctgtcaatgactgggaggaattcattgtt
tcagacttcatcaagaagcagattgtcatcattgagaagtctgggctgatcctcaatgtg
ctgaagacctcacactcgctgctgacaaagccgttcagtgtatgcgtggacgtgtctagt
aacatttttgtggttgatcagttgaaggtgattaaattttcaccagacggtgagacaggg
gaggtagtgttgagcaaccaaagtcggctgaagagaccccgtgtccttgctgtggacgac
ggcgggcgccttgttctggtgcaagaggatggttacgtccacatttattgtttctag
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