Caretta caretta (Loggerhead turtle): 125641844
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Entry
125641844 CDS
T09292
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125641844 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccay01009
]
125641844 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccay04515
]
125641844 (PCDH1)
Protein phosphatases and associated proteins [BR:
ccay01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125641844 (PCDH1)
Cell adhesion molecules [BR:
ccay04515
]
Cadherins
Protocadherins
125641844 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
TMEM154
Syndecan
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
125641844
NCBI-ProteinID:
XP_048718316
LinkDB
All DBs
Position
8:39394454..39513946
Genome browser
AA seq
1078 aa
AA seq
DB search
MTWLAACLGLWLFLQLPILGAGTRVVYQVQEEQPPNTLIGSLAADYGFPDVGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRESLRECQSQFPGDRCFLEFEVSITDLKMNSSPRLLEGQ
IEVLDINDNTPNFASPVITLAIPENTNIGALFPIPLAMDRDAGANGVASYELLAGPEAQE
LFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGSPPRASSALLRITILDMND
NTPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQATDMVRRLLRLDRA
TGLITVQGPIDREDINILKFSVLAKDKGANPKSARTQVVVTVKDMNDNAPSIEIRGIGLV
THQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKK
YFLQTTTPLDYEAVKEYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFSQSLTEVAF
PENNAPDDLVVEVSASDADSGSNAKLVYSLVMDPSSKGVFSIDPDSGEIRVKTVLDREQR
ERYEFLVVAADKGSPSLKGTASVAINVVDRNDNDPKFMLSSYNFSVMENMPPLSPVGMVT
VIDADKGNNARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPR
SAYVGVTINVLDENDNAPFITSPSNASYKHILPHTSPGQQVSKVKAEDIDSGVNAELTYS
ITGGNPFELFQISSQSGDITLEKEILRKHHGLHRLVVRVNDRGKPSRHGTALVHFYINET
LANRTLLETLLGHSLDTPLDIDIAGDPEYERGKQRSNILFGVIAGIVAVTLVIVLVVLVR
YCRQREAKSGYQAGKKETKDLYAPKQGNKSSKSKGKVKKSKSPKPPKPSEDEEETGLQKS
LKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQD
LPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFSAANQAQDLQDPSQH
SYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENESPERNRL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgacgtggctggcagcctgcctgggcctgtggctcttcctgcagctccccatcttgggc
gctgggacacgcgtggtctaccaagtacaggaggaacagccgcccaacacactcattggg
agcttggctgccgactacggctttcctgacgtggggcacctctacaagttggaagtgggg
gccccctacctgcgtgtggatggcaagactggggacatttacaccacggagacctccatc
gaccgagagagcctgcgggagtgccagagccagttcccaggggaccgctgcttcttggag
ttcgaggtgtccatcacggacctgaagatgaacagcagcccacgcctgctggaggggcag
atcgaggtgctggacatcaacgacaacacgcccaactttgcctcacccgtcatcacgctg
gccattcctgagaacaccaacattggggcactcttccccatccccctggccatggaccgt
gatgcaggagccaatggggtcgcctcctacgagctcctggctgggcctgaggcgcaggag
ctctttggcctacaggtggctgaagatcaggatgagaagcagccacagctgattgtcatg
gggaacctggaccgagagcagtgggactcctatgacctgaccatcaaggtgcaggatgga
ggcagcccaccacgggcaagcagcgccctgctgcgcataaccatcctggacatgaacgac
aacacccccaagtttgagaaggccctgtacgaggcggagctctcggagaacagccccgtg
gggcactccgtccttcaggtgaaagccaacgactcagatcagggcgccaatgccgagatt
gactactccttccaccaggccacggacatggtgcgccgcctgctgcgcctggacagggcc
acgggtctcatcactgtgcaggggcccattgaccgggaggacatcaatatcctcaagttc
tctgtcctggctaaggacaagggggccaatcccaagagtgcccgcacccaggtggtggtg
accgtcaaggacatgaatgacaacgccccctccattgaaatccggggcattggccttgtc
acccatcaggacggcatggccaacatctctgaagacgtgcctgtggagacggccgtggct
ctggtacaggtgtctgaccgggatgagggtgagaacgctgtggtcacctgtgtggttgct
ggcgatgtcccgttccagctgagacaggccagtgagacgggcagtgacagcaagaagaag
tacttcctgcagaccaccacgccgctggactacgaggcggtgaaggagtacaccatcgag
atcgtggctgtggactcggggaacccgcccctctccagcaccaactctctcaaggtgcag
gtggtggatgtgaatgacaacgccccagtcttcagccaaagcctcaccgaggtggccttc
cccgagaacaatgcacctgatgacctggtggtggaggtgagcgccagcgacgctgacagc
ggctccaatgccaagctggtttactccctggtcatggacccctcctccaagggcgtcttc
tccatcgaccctgactcaggcgagatccgagtgaagacggtgctggaccgggagcagagg
gagcgctacgagttcctggtggtggcagctgacaagggcagtcccagtctcaagggcact
gcatctgtggccatcaatgtcgtggacaggaacgacaacgaccccaagtttatgctgagc
agctacaacttctcagtgatggagaacatgcctcccctgagtccggtgggcatggtgaca
gtgattgacgctgacaagggcaacaacgcccgaatccagctgtcagtggagcaggacaac
ggggactttgtcatccagaatggcactggcacgatcctctccagcatctcttttgaccgg
gagcagcagagcacgtacacctttcggctcaaagctgtggatggcggggaccctcccaga
tccgcctacgtgggggtgaccatcaacgtgctggacgagaatgacaatgcccctttcatc
acctccccttccaatgcctcttacaagcacatcctgccccacaccagccctgggcagcag
gtcagcaaggtcaaggccgaggacattgactcgggggtcaatgcagagctgacttacagc
atcacggggggtaaccccttcgagctgttccagatctcgtcgcagagcggggacatcacg
ctggagaaggagatcctgcgcaagcaccacggcctgcaccgcctggtggtgcgggtcaat
gacaggggcaagccctcacgccacggcaccgcactggtgcacttctacatcaatgagacc
ctggccaaccgcacgctgctggagaccctgctgggacacagcctggacacgccgctggac
atcgacattgccggcgaccccgagtacgagcgcggcaagcagcgcagcaacatcctcttc
ggcgtcattgccggcatcgtggccgtcaccctggtcatagtactggtggtgctggtgcgc
tactgccggcagagggaggccaagagcggctaccaggcgggcaagaaggagaccaaggac
ttgtacgcccccaagcagggcaacaagagcagcaagagcaagggcaaagtgaagaagagc
aagtcccccaaaccgcccaaaccgtccgaggatgaggaggagacagggctgcagaagtcc
ctcaagttcaacctcatgaacgactctgtcagtgatagcccccgcatccacctgcctctc
aactacccgcccgggagcccggacctggggcgccactaccgctccaactccccactgccc
tccatccagctgcagccccagtcaccctccgcctctaagaagcaccaggtggtgcaggac
ctgcctgccactaacacctttgtgggcactggggacaacaactcaacgggctccgaacag
tactctgactacagctaccgcaccaacccccagaaatacaccaacaagcagttacctcat
cgccgagtgacattctctgcagctaatcaggcacaggacttgcaggacccctctcaacat
agttactatgacagcgggctagaagagtcagagacgcccagcagcaagtcctcatcaggg
ccccggattgggccactagctcttcctgaggatcattatgagcgcaccacacccgacggt
agtattggggagatggagcaccctgagaacgagtcccctgagcggaacaggctgtga
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