Caretta caretta (Loggerhead turtle): 125642140
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Entry
125642140 CDS
T09292
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125642140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125642140
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125642140
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
125642140
NCBI-ProteinID:
XP_048718933
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All DBs
Position
9:70560544..70594878
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AA seq
638 aa
AA seq
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MATELEPPASGAAPLEAEEDEEHWLYGDDTTGKQEDGPIAGHAESSHPLQDAPQESRPVT
SEDREMSQHAPPSGEDEEEDSDSDSDDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTGRGY
GTSSSAKLQPKGIDLDATGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEETWK
AYCEKQRRLQLGLDPSPPISSENKITVQQGRTGNSEKEPENNIIKTEFKTDFVALIGGRM
KAGPPPNRFLEIMELSHNPHSSPSNHHSPSSHLSNSRLYHQQVPHLPQLLGHPHHTFSTL
PLQLLLSHLLCILQACHHQVPFQGCSLHLWLLHQLFSFQHLMAQSSIFTLPLAFSRLTIF
LNFGVAAAGHHGKEEGGSVTRGRGDCQGFWPDPVPHFLSPSSRQDLPLCPASPCYQIPHP
PSTQGNGGKQQQRSGDLLLVWRPGSQPAGYNNRQPPPFGYSSADSGFISYPPISTSHTPW
VTTVDKGTSSSSSSHWEYSSSRRERERERERERERDRDRTPTTSEYNNSSPCLTVRLSLP
QSDDERYRYYSRERGYDFERDYRRSRDRSREREDRHRERRHREKEDSSKHKSSRRKQHES
EEGESHRRHKHKKNKRSKEEKEASDDGVAEGDEQDAKE
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccccctgcctcgggcgcggcgccgctggaggcggaggaggac
gaggagcactggttgtacggggatgacaccactggtaagcaagaagatggaccaattgct
ggacatgcagaatcttctcatcctttgcaagatgctcctcaggagagccggcctgtcacc
agtgaagaccgagagatgtctcaacatgcccctccaagtggtgaagatgaggaggaagac
agtgatagcgacagtgatgatgatgatgatgtgaaagttaccattggcaacattaaaaca
ggagcaccatcatacatggggactcctatgaatctgaacttaaaaacaggtagaggctat
ggaacatcctcttcagccaagttgcagcccaaaggtattgatctagatgccacagggaat
ataaatggattgcctgtaatagaagtggatttagattcgtttgaagacaaaccgtggagg
aaaccaggtgctgacctttcggattactttaattatggattcaatgaagaaacatggaaa
gcttattgtgaaaaacagcgacggcttcagcttggactggatccctctccgcctatcagc
agtgagaataagatcacagttcagcaaggaaggacaggaaattcagagaaagaaccagag
aacaacattatcaaaacggaattcaaaacggattttgtggctctgataggaggacggatg
aaggctgggcctccaccaaataggttcttggagatcatggaactaagccacaacccccac
agcagccccagcaaccatcacagccccagcagccacctcagcaacagccgtttgtaccac
cagcaggtcccccacctcccccaattgctgggccacccccaccacactttctccaccctc
cccctccagttacttctgtcccacctcctctgcatcctccaggcttgccaccaccaggtc
ccattccagggctgttccctccacctctggctcctccaccagctcttctcattccaacac
ttgatggcacaatcttccattttcacactgcctctggccttttcaagactgaccattttc
ctgaattttggtgtggccgctgcaggacatcatggcaaagaggaaggaggatctgtgact
agagggaggggagactgtcagggcttctggccagatccagtccctcacttcttatctcca
tcctcccggcaagacctcccactctgtcctgcctctccctgctaccagatcccacatcca
ccctcaacccagggcaatggagggaaacagcagcagcggagtggagacttgttgttggtc
tggagaccaggcagccaacctgccggctacaataacaggcagcctccaccatttggatac
agctctgcagattctggtttcatcagctaccctcctatttccacgtctcacacgccctgg
gtaacgacagtggataagggcacaagcagctccagcagcagccactgggagtactccagc
tcaaggcgtgagagagaaagggagcgggaaagggaaagggagagagacagagaccggact
ccaaccaccagtgaatacaacaacagctccccctgcctcacggtacgcttgtctctcccc
caaagcgacgacgagcgatatcgctactacagtcgggagcgaggttatgattttgagcgg
gattatcgcaggagtagagatcggagcagagagcgggaggatcgccaccgggagcgcagg
cacagagaaaaggaggacagcagtaaacataagtcttcaagacgtaagcagcacgagagt
gaagagggtgaaagccaccggcgccacaagcacaaaaagaacaagcgcagcaaagaggag
aaggaggccagtgatgacggcgtcgcagagggagatgaacaagatgctaaggagtaa
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