Caretta caretta (Loggerhead turtle): 125642429
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Entry
125642429 CDS
T09292
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125642429 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccay04131
]
125642429 (VPS8)
Membrane trafficking [BR:
ccay04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125642429 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_11
TPR_Vps41
zf_RING_Vps8_fungal
Clathrin
zf-RING_2
Beta-prop_WDR5
Beta-prop_WDR3_1st
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
125642429
NCBI-ProteinID:
XP_048719751
LinkDB
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Position
9:49120120..49349811
Genome browser
AA seq
1414 aa
AA seq
DB search
MEPESLGAEQGASLPGPADELGTLLGQDAALPKLSGGELDRELESKSDLIDDKEFDIPQV
DTPPTLESILNETDDEEESFVLEDPSLLNIDNIDTHSYDTSSLASSDSGDRTHSKRKKKL
PDSFSLHGSVVRLSLLKGISAQIVSAADKVDAGLPTAIAASSLIAVGTSHGLALIFDPNQ
ALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPG
TAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAK
TELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAAQNS
VNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQKQLHLHYDLINFTWINSRTVVLLDSVEKL
HMIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSQALALVGERACYQSISSCGGQI
FYLGTKSVHVMMIRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDANKRKSV
LADRMVEILFHYADRTLKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLLFSQMYDK
LSENSVAKGVFLECLEPYILSDKLMGMTAQVMKDLLLHYQDKNLMEDMEACIVHMDITSL
DIQQVVLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEKVVMGNK
LLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASADEEVYPYVRTLLHFD
TREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAK
PNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEENRLIPMAEKAE
FYQICEFMYEREHLYDKIIDCYLRDPVRKEEVFNYIHNILSIPGYSAEEKQSVWQKAMKH
IEELLLLSPNKAADLIATHFNDQIEGIIKNLQDQFLLFQFLRSLLDPREGINQDMLQISP
CVTEQFIELMCHYNPDHVLETLQVLEFYRLEETIQITQKHLLHEASSYLLEKKGDIHGAF
LVMLEQLRSKLLMLTCEIEESTELHLLKDIEDTLVKTIALCQRNSHSLNQQQREALWFPL
LEAMMSPQKLSSSTVLCQYSEPLKSLTMQVLNNMAAFIALPSILQRILQVSSRGRENIDP
VYGRGKLGEIQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASITRGLNPKQDY
CCICLQQYKRRQEMADEIIVFSCGHLYHSLCLLSKECGIETKGQMRWTCYKCNSSNKGGK
LSENFSELKKGNGASLAQTSSESLLDSQQIQAFDQLCRLYRGTSRLALLTELSRTHGGEK
HGLLNVSQGDPALNSVFQNENFQLHLTPPPLTEE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgagagcctcggcgcggagcagggcgcctctctcccggggcccgccgacgag
ctggggacgctgctgggccaagatgccgcgctgccgaagctgagcggcggggagctggac
agggagctggagtccaaaagtgacctgatagatgacaaagagtttgatattccccaggtt
gatacccctccaacactggaaagcatattaaatgagactgatgatgaagaggagtctttc
gttcttgaggatccctctcttttaaacattgataatattgacactcactcctatgacaca
tcttccttggcaagctcggacagtggggacaggacgcactcgaaaagaaagaaaaaactc
cctgattctttctctcttcatggatcggttgtccgtctttctcttctgaaaggaatttct
gcccaaatagtatctgctgcagacaaagtggatgctggtttacctactgcaatagcagcg
tcaagtctgatagcagtggggacttcccatggtttggcattaatttttgatccaaaccag
gctcttcggctttgtctgggcagcactgctgttggggcccagtacggggctatctcagct
ctgagtatcaacaatgactgttcaagactactgtgtggctttgcaaaaggacagattacc
atgtgggatctggctagtgggaaacttttaagatcaataacagatgctcatcccccagga
acagcaattttacacatcaagtttacagatgacccaacgcttgcaatttgcaatgacagt
ggaggctccgtgtttgagctgtcatttaagagagttatgggtgtgagaacatgtgagtct
cgatgtctgttcagtggttccaagggagaagtttgctgtattgaacccttacatgcaaag
actgaattgagagatcatcctatcacccagtactcactactggcaatggcttccctaact
aagattctagtcattggcttgaaaccatctttgaaggtgtggatgacttttccctatggt
cgtatggatccctctagtgtgccactgctggcgtggcattttgttgctgcacagaactct
gtgaaccccatgcttgccttctgtcgaggagatgttgttcattttcttttggtgaagaga
gatgactcaggtgcaatacatgttactaagcaaaagcaacttcatctgcactatgacctg
atcaattttacttggataaactcacgcacagtagtgcttctggacagtgtggagaagctg
catatgatagatcgccagacgcaggaggagctggagactatagagatttcggaggtgcag
ctagtatataacagtagtcacttcaaatcactggccacaggaggcaatgtcagccaagca
ttggccctggttggggagagagcctgttaccagtccatcagcagctgtggtggtcaaatc
ttctatcttggcactaagtctgttcatgtgatgatgataaggagctggagagagagagtg
gatcaccttctgaaacaagactgtcttactgaggccctggctctagcatggtcttttcat
gagggtaaagcaaaggctgtagtagggttgtctggggatgccaataagcgaaagtctgtc
cttgctgaccgaatggttgaaatcctcttccattatgcggatcgaactttgaaaaaatgt
cctgaccagggtaaaatccaagttatggagcaacactttcaggatatggtgcctgtcata
gtcgactactgccttttacttcagcgaactgatcttctgttcagccagatgtatgacaaa
ttgagtgagaattcagtggcaaagggtgtttttctggagtgcctggagccttacatttta
agtgataagttgatgggaatgacagctcaagtgatgaaagacttgctgcttcactaccaa
gataagaacctaatggaggacatggaggcctgcattgtgcatatggatatcaccagccta
gacatacagcaggtagttctcctgtgctgggaaaatcatctgtatgatgccatgatctat
gtgtacaacagtggaatgaatgacttcattagtccgatggagaaattgttcaaagtcatt
gctcctccccttaatgctgggaagtctctcacagatgagaaagtggttatggggaacaag
ctccttgtgtacataagctgctgcttagcaggtcgtgcttatccattgggtgatattcct
gaagatctggtacccttggttaaaaaccaggtgtttgaatttcttatccgtctccactca
gctgaggcatctgcagatgaagaagtctacccgtatgttcgtacgctgctgcactttgat
accagagagttccttaacgttcttgcactgacttttgaagactttaagaatgacaagcaa
gcagtggagtatcaacaaagaattgtggacatcctgctaaaggttatggtggaaaattct
gatttcaccccatcacaagttggctgtctttttacctttcttgcccggcagctcgctaaa
cccaacaatacgctgtttgtaaacaggacactttttgaccaggtccttgaatttctatgc
agccctgatgacgattcccgacactcagagagacagcaggtccttttagaactactgcaa
gctggagggatagtacaatttgaagagaatcgtctcatccctatggcagaaaaagctgaa
ttctatcaaatttgtgagtttatgtatgaacgggagcacctctatgacaaaatcattgat
tgttacttacgcgatccagtgagaaaggaagaagtgttcaactacatccacaatatccta
tccattcctgggtacagtgccgaggagaagcagtcagtgtggcagaaggctatgaaacac
attgaggagctgctgttactgagcccgaataaagcggcagacctgatagccactcacttc
aatgaccagattgagggaatcattaaaaatcttcaggaccagttcttgcttttccaattt
ttgagaagtctccttgacccaagggaaggtatcaatcaggacatgctacagatatctccc
tgtgtcactgaacagttcattgagttgatgtgtcactacaatcctgaccatgttttagag
acactgcaggttctggagttctacagactggaagagaccattcagattacccagaaacac
ctgctccatgaagcttcctcctacctgctggagaagaaaggagacattcatggtgccttc
ctagtaatgcttgagcaattacgaagcaagttgctgatgcttacatgtgaaattgaagaa
tcaacagaactccacttattaaaggatattgaagataccttagtgaaaacaattgcactt
tgccagaggaattcacatagtttaaaccagcagcagcgagaggcactctggtttcccctc
ctggaggctatgatgtcaccacagaagctatccagttcaacagtgttgtgtcagtattct
gaacctctgaagagtttgacaatgcaagtgctaaacaacatggctgcatttattgccctt
ccctcaatcttgcagagaattctccaggtgagcagcaggggaagagaaaacatagatcca
gtttatggtagagggaaacttggagaaattcagggacttgtactggggatgctggacaca
tttaactatgagcaaacccttctagagacaactactaacctcctgaaccacgatctgcac
tggtccttgtgtaacctgagagcctccatcactagagggcttaacccaaagcaggattac
tgctgtatctgtctgcagcaatacaagagaaggcaagagatggctgatgaaatcattgtc
ttcagttgtggccatttgtaccactcactctgtctgctgagtaaagagtgtggcattgaa
accaagggacagatgagatggacttgctataaatgcaactcaagtaacaaagggggaaaa
ctaagtgagaatttctcagagctcaaaaaagggaatggtgcatctctggcacagacaagt
tcagagtccctgttggattcccagcaaatccaggcttttgaccaactctgtcgactctat
cgaggaacctccaggttagctctcctgacagaattgtctcgaactcatggtggtgaaaaa
catgggctcctcaatgtctctcagggtgaccctgcactgaacagtgtcttccagaatgag
aatttccagctgcatctcactccccctccactgacagaagagtag
DBGET
integrated database retrieval system
