Caretta caretta (Loggerhead turtle): 125642576
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Entry
125642576 CDS
T09292
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04510
Focal adhesion
ccay04512
ECM-receptor interaction
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125642576 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125642576 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125642576 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125642576 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125642576 (COL4A4)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125642576 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125642576 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125642576
NCBI-ProteinID:
XP_048720126
LinkDB
All DBs
Position
9:34783164..34918043
Genome browser
AA seq
1669 aa
AA seq
DB search
MPSAGLLLNAPTWWLMTIFSVQQIHGDKYSYIGPCGGQDCSVCQCFPVKGSRGQPGHLGA
QGPIGSLGCTGPDGLQGEKGERGENGLPGPAGEKGDKGPTGVPGFPGLDGVPGYPGVEGS
RGKPGLDGCNGSRGDPGFPGERGCIGPRGSFGVLGQKGEKGNSAYISDFIRGAPGPRGEP
GPPGTPGARGLRGPHGLPGQPGLQGAPGLPGLQGEQGNPGTGVDGQKGELGDVGPPGSPG
QPLLVGPPDFFLVKGEKGVKGMPGLVGPKGSHGPKGAPGNGEKGEKGIPGDPGMQGSPGS
CGSLGFPGIKGASGVPGVPGQAGYAGLKGDRGERGQPGLPGVFGTPPVAMKGSRGDPGLP
GPSGDDGLIGLTGPPGPSGRPGEDGTSLPGLPGACGQQGPKGSHGDPGLPGTAESTPGRP
GSPGAPGLPGAPGRQGLPGPPGIVCHGRGLRGHQGIKGQMGPLGRRGEKGEKGNHGHCSC
DLGSAGPPGTQGPPGRQGRKGQMGFPGSYGEKGDPGFSGTIGSTGLPGKPGSSGIAGEKG
EKGDLAIVKIKGIKGKRGPLGVPGLTGQKGTAGRDGDPGLPGERGIQGDGGSALPGDKGF
LGAPGLPGSRGPMGPSGLGFPGPQGIRGHPGDPGSTGISGPPGLKGQRGDIHCYVPPYPG
SPGPPGFQGAQGPKGLRGPPGPPGPNGFDGQKGQRGKPGTSGDIGPDGFRGNPGDPGDEG
ERGSSPDGAPGFPGSPGLSGQKGVPGDTSYGLPGIPGHRGLPGLPGLQGIRGESGTPGPQ
GQSGRPGFPGATGLRGRKGEIGAPGSPGQPCDKGLQGPPGQLGVLGQRGPPGLPGFKGQK
GDMGPPGPAGMKGLPGSPGVPGSPGPPGPRGYPGLPGSNGLPGLPGQRGSKGIQGIQGFP
GISGKGGQTGIPGGPGEQGEMGSRGPSGECGDGGQKGERGAQGDSGFITLWLEKGQKGEQ
GLPGAAGFPGETGEKGSLGIRGIPGFPGKDGLPGTQKGEPGDRGQIGFPGLPGSPGLGGL
RGITGFQGQPGAQGERGLPGIPGYPGRDGAKGLKGNRGDSGSQYGPPGQRGPPGDRGSPG
PCGFPGEQGLPGFQGEPGRQGPKGMPGSPGAKGFPGAICDLGLPGVPGGQGNTGPLGAAG
LPGSPGPLGRKGLSGLPGLDGLNGLQGQKGSPGDPGKSEIGPPGYTGAPGPKGDKGEPGQ
PGISLPGPPGDTGLPGHPGRTGDTGPAGSVGRSPETAASGPPGDQGPPGSHGIRGLPGNP
GPPGKTIFVKGDPGEFGVPGAPGIPGQSGQQGAKGFPGNQGRRGLKGPTGSPGPQGPPGP
VGPSGDRGFQGQPGPRGPEGDPGEPGKTEHSPCPKTPGPRGVIGQRGAEGSVGFPGPIGY
PGPPGSKGEEGLFGLPGQDGSPGPPGPSGDQGVIGERGYTGPEGPPGQAGIPGPPAPETR
AASGFLLILHSQSDKEPFCPEGMPRLWTGYSLLYLEGQEKAHDQDLGLAGSCLPVFNTMP
FVFCNIHQVCNYASRNDKSYWLSAAAPLPMMPLSEDEIQPYISRCAVCEASAQAVAVHSQ
DQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSTGSCLEDFRSAPFIECQGQRGTC
QFFANEYSFWLTIVRPELQFVSASLSETLKDGHEQRKKISRCQVCMKHG
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcgcggggcttcttctaaacgcccctacctggtggctaatgacaattttttca
gtgcaacaaatccatggggacaaatattcatatattggtccatgtggaggacaagattgt
tcagtttgccagtgctttcctgtaaaaggatcaagaggtcagcctggtcacttaggtgct
caaggtccaattggatctttgggatgtacagggccagatggtttgcaaggagagaaagga
gagagaggtgagaatgggctgcctgggcccgctggagaaaagggtgataagggcccaaca
ggagtcccaggatttcctggtttagatggtgtgcctggatatcctggagttgaagggtcc
aggggcaaacctggcttggatggctgcaatggttcaagaggagatcctggatttccagga
gagagagggtgtattggaccaagaggctcatttggtgttcttgggcaaaaaggagaaaaa
ggaaactctgcatatatttcagatttcattagaggtgctccaggaccaagaggtgaacca
ggcccccctggcacacctggagctagggggctaaggggcccacatggattgccaggtcaa
ccaggcttgcagggagctccgggccttcctggtttgcaaggtgaacagggcaatccaggt
actggagtggatggacaaaagggggagctgggtgatgttggacctcctggatctccagga
cagccattgttggttgggccgcctgattttttcctggttaaaggagaaaagggtgtaaaa
ggaatgcctgggttggtaggacccaaaggatcacatgggcccaaaggtgcacctggaaat
ggagagaagggtgaaaaaggtattcctggagaccctggaatgcagggtagccctggttct
tgtggatctctaggttttccaggaataaagggggcaagtggagttcctggtgttcctggt
caggctggttatgctggtctaaagggggatcgtggagaacgagggcaaccaggcctgcct
ggagtttttggaacaccacctgttgctatgaaaggttctcgaggggatcctggattacca
ggtccttctggagatgatgggttgattggactaactggtcctccaggcccatcaggaaga
cctggtgaagatggaacaagcctccctggtctgccaggagcatgtgggcaacaaggtcct
aaaggttcgcacggggatcctggtctccctggaactgctgaatcaactccaggaagacca
gggtctccaggagcaccaggattaccaggagcaccaggaagacagggtttgcctggacca
cctggtatagtttgtcatggcagaggtctccgtggacatcaaggaataaaaggccaaatg
ggacccctgggaagaagaggtgaaaaaggcgaaaaagggaatcatggccactgttcatgt
gaccttggttctgctggcccacctggtacacaagggccacctggtcgtcaaggaaggaaa
ggacagatgggatttcctggaagctatggagaaaagggtgatccaggtttctctggcaca
ataggatcaacaggactcccaggcaagcctggttcttctggaatagctggtgaaaaagga
gaaaagggtgacctggccatagtgaaaatcaaaggaataaaaggaaaaagaggccctcta
ggggttccaggacttacaggccaaaaaggtactgctggcagagatggagatccaggattg
cctggagagagaggaattcaaggtgatggtggatcagcactgccaggtgataaaggattt
cttggggcaccaggacttcctggttcaagagggcctatgggaccatcaggtttgggattt
cctggcccacagggaatcaggggtcatcctggagacccaggaagtactggcataagtgga
ccacctggtctaaagggtcaaagaggtgacatccactgttatgttccaccatatcctgga
agtccaggccctccaggttttcaaggggctcaaggaccaaagggattaagaggaccccct
ggtcctcctgggccaaatggctttgatgggcaaaagggccaacgaggcaaaccaggaaca
tcaggagatatagggccagatggctttcgaggcaatcctggtgatccaggtgatgaaggt
gaaagaggttcttcccctgatggtgccccaggtttccctggcagtcctggactttcaggt
cagaaaggtgttccaggtgataccagttatggtcttccaggaattccaggccacagagga
ttgccaggattacctggtttacaaggaatacgaggtgaatcaggcactcctgggccacaa
ggacagtctggcagaccaggatttccaggtgctacaggtctgagaggcagaaaaggtgaa
ataggagctccaggttcacccggtcagccatgtgataaaggcttacaagggccaccagga
cagctaggagttcttggacagcgaggccctccaggcttaccaggttttaaaggtcagaaa
ggagacatgggcccaccagggccagctggaatgaaaggcctaccaggatctcctggtgta
ccagggtcccctggtcctccaggccctcgaggatatccagggcttcctgggagcaatgga
ttacctggactcccaggccaacgaggtagcaaaggcatccaaggcatccaaggtttccca
ggaatctcaggaaaaggcggacagacaggaatcccgggtggacctggtgaacaaggagaa
atgggctcaagggggccttctggagaatgtggggatggagggcaaaaaggtgaaagaggt
gctcaaggagacagtggcttcattaccttatggctggaaaaaggacaaaagggggaacaa
gggcttcctggtgcggctgggtttccaggggaaacaggtgaaaaaggcagtcttggaatc
agagggatcccaggatttccaggcaaagatgggctcccaggaactcagaagggtgaacct
ggggatcgtgggcagattgggtttccagggctgccaggctccccaggattgggaggttta
agaggaattactggttttcaaggacaaccaggtgcccagggtgagcgaggtttaccagga
attcctggatatccaggccgtgatggtgcaaaaggacttaaaggtaacagaggtgactcg
ggcagtcaatatggtccacctggtcaaagaggtcctccaggagatcgtggatcaccagga
ccctgtggattcccaggagagcaaggtttaccaggtttccaaggggaacctggaagacaa
ggacccaaggggatgcctggatccccaggagcaaaaggctttccaggtgctatatgtgat
ttgggattgccaggagttccaggtggacaaggcaataccgggcctttaggagctgcagga
ttgccaggatcacctggtcccctaggcaggaaaggtttatcagggttgcctggattagat
ggcttgaatggactgcaaggtcaaaagggctcaccaggagatccaggtaaaagtgaaata
gggcctccaggatacacaggggcccctggaccaaaaggagacaagggtgaacctggacag
ccaggaatttctcttccaggacctcctggagacacgggtttgccaggacacccaggtaga
acaggagataccgggcctgcaggatctgtgggaagatctcctgaaactgcagcttctggt
cctccgggtgatcaggggccacctggctcacatggcatcagaggcctgcctggcaatcct
ggccctcctggaaagactatctttgtgaaaggcgatccgggggaatttggtgttccaggt
gcacccggtattcctggccagtcagggcagcaaggagccaaaggctttccaggaaatcaa
ggaagaagaggcctgaaaggtccgacgggaagccctggcccccagggtccccctggccct
gttgggccatctggggatcgaggttttcaaggacaacctggccctcgaggtcctgaaggt
gaccctggtgaaccaggaaaaacagaacactccccatgtcccaagacaccaggtcctcgt
ggagtaataggacaaagaggagctgaagggtctgtaggatttccagggccaataggttac
cctggacccccaggaagtaaaggtgaagaagggttgtttggcttgccaggtcaagatggc
tcacctggtccaccaggaccctcaggtgaccaaggtgtcataggagaacgaggatacact
ggtccagaaggtccacctggccaagccggaatcccaggaccaccagcgcctgaaacgaga
gctgctagtgggttcctgctcattcttcacagtcagtcagataaagaaccattttgtcct
gagggaatgccaagattgtggacaggatatagtctgctatatctggaaggacaggagaaa
gctcatgatcaagatcttggcctggcaggatcctgtcttcctgtattcaacaccatgccg
tttgtcttctgcaacatccaccaagtttgtaactatgccagtcgaaatgataagtcctac
tggctgtcagctgctgctcctttaccaatgatgcctctctctgaagatgaaatacaaccc
tacattagcagatgtgctgtatgtgaggcttcagcccaagctgtagcagtccatagccaa
gatcagtccattcccccatgcccattgaactggagaagtctttggataggctattctttt
ttaatgcacactgggtctggagatcagggaggcggacagtctcttatgtcaactggaagt
tgccttgaagactttagatcagcaccattcatcgaatgccagggtcagcggggaacatgt
caattttttgctaatgaatatagcttctggttaacaatcgtcaggccagaattgcagttt
gtctctgcgtctctgtcagaaacccttaaagacgggcatgaacagcgcaaaaaaattagc
agatgtcaggtctgcatgaagcatgggtaa
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integrated database retrieval system
