Caretta caretta (Loggerhead turtle): 125642576
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Entry
125642576 CDS
T09292
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04382
Cornified envelope formation
ccay04510
Focal adhesion
ccay04512
ECM-receptor interaction
ccay04518
Integrin signaling
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125642576 (COL4A4)
04518 Integrin signaling
125642576 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125642576 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125642576 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125642576 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125642576 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125642576 (COL4A4)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125642576 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125642576 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125642576
NCBI-ProteinID:
XP_048720126
LinkDB
All DBs
Position
9:34783164..34918043
Genome browser
AA seq
1669 aa
AA seq
DB search
MPSAGLLLNAPTWWLMTIFSVQQIHGDKYSYIGPCGGQDCSVCQCFPVKGSRGQPGHLGA
QGPIGSLGCTGPDGLQGEKGERGENGLPGPAGEKGDKGPTGVPGFPGLDGVPGYPGVEGS
RGKPGLDGCNGSRGDPGFPGERGCIGPRGSFGVLGQKGEKGNSAYISDFIRGAPGPRGEP
GPPGTPGARGLRGPHGLPGQPGLQGAPGLPGLQGEQGNPGTGVDGQKGELGDVGPPGSPG
QPLLVGPPDFFLVKGEKGVKGMPGLVGPKGSHGPKGAPGNGEKGEKGIPGDPGMQGSPGS
CGSLGFPGIKGASGVPGVPGQAGYAGLKGDRGERGQPGLPGVFGTPPVAMKGSRGDPGLP
GPSGDDGLIGLTGPPGPSGRPGEDGTSLPGLPGACGQQGPKGSHGDPGLPGTAESTPGRP
GSPGAPGLPGAPGRQGLPGPPGIVCHGRGLRGHQGIKGQMGPLGRRGEKGEKGNHGHCSC
DLGSAGPPGTQGPPGRQGRKGQMGFPGSYGEKGDPGFSGTIGSTGLPGKPGSSGIAGEKG
EKGDLAIVKIKGIKGKRGPLGVPGLTGQKGTAGRDGDPGLPGERGIQGDGGSALPGDKGF
LGAPGLPGSRGPMGPSGLGFPGPQGIRGHPGDPGSTGISGPPGLKGQRGDIHCYVPPYPG
SPGPPGFQGAQGPKGLRGPPGPPGPNGFDGQKGQRGKPGTSGDIGPDGFRGNPGDPGDEG
ERGSSPDGAPGFPGSPGLSGQKGVPGDTSYGLPGIPGHRGLPGLPGLQGIRGESGTPGPQ
GQSGRPGFPGATGLRGRKGEIGAPGSPGQPCDKGLQGPPGQLGVLGQRGPPGLPGFKGQK
GDMGPPGPAGMKGLPGSPGVPGSPGPPGPRGYPGLPGSNGLPGLPGQRGSKGIQGIQGFP
GISGKGGQTGIPGGPGEQGEMGSRGPSGECGDGGQKGERGAQGDSGFITLWLEKGQKGEQ
GLPGAAGFPGETGEKGSLGIRGIPGFPGKDGLPGTQKGEPGDRGQIGFPGLPGSPGLGGL
RGITGFQGQPGAQGERGLPGIPGYPGRDGAKGLKGNRGDSGSQYGPPGQRGPPGDRGSPG
PCGFPGEQGLPGFQGEPGRQGPKGMPGSPGAKGFPGAICDLGLPGVPGGQGNTGPLGAAG
LPGSPGPLGRKGLSGLPGLDGLNGLQGQKGSPGDPGKSEIGPPGYTGAPGPKGDKGEPGQ
PGISLPGPPGDTGLPGHPGRTGDTGPAGSVGRSPETAASGPPGDQGPPGSHGIRGLPGNP
GPPGKTIFVKGDPGEFGVPGAPGIPGQSGQQGAKGFPGNQGRRGLKGPTGSPGPQGPPGP
VGPSGDRGFQGQPGPRGPEGDPGEPGKTEHSPCPKTPGPRGVIGQRGAEGSVGFPGPIGY
PGPPGSKGEEGLFGLPGQDGSPGPPGPSGDQGVIGERGYTGPEGPPGQAGIPGPPAPETR
AASGFLLILHSQSDKEPFCPEGMPRLWTGYSLLYLEGQEKAHDQDLGLAGSCLPVFNTMP
FVFCNIHQVCNYASRNDKSYWLSAAAPLPMMPLSEDEIQPYISRCAVCEASAQAVAVHSQ
DQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSTGSCLEDFRSAPFIECQGQRGTC
QFFANEYSFWLTIVRPELQFVSASLSETLKDGHEQRKKISRCQVCMKHG
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcgcggggcttcttctaaacgcccctacctggtggctaatgacaattttttca
gtgcaacaaatccatggggacaaatattcatatattggtccatgtggaggacaagattgt
tcagtttgccagtgctttcctgtaaaaggatcaagaggtcagcctggtcacttaggtgct
caaggtccaattggatctttgggatgtacagggccagatggtttgcaaggagagaaagga
gagagaggtgagaatgggctgcctgggcccgctggagaaaagggtgataagggcccaaca
ggagtcccaggatttcctggtttagatggtgtgcctggatatcctggagttgaagggtcc
aggggcaaacctggcttggatggctgcaatggttcaagaggagatcctggatttccagga
gagagagggtgtattggaccaagaggctcatttggtgttcttgggcaaaaaggagaaaaa
ggaaactctgcatatatttcagatttcattagaggtgctccaggaccaagaggtgaacca
ggcccccctggcacacctggagctagggggctaaggggcccacatggattgccaggtcaa
ccaggcttgcagggagctccgggccttcctggtttgcaaggtgaacagggcaatccaggt
actggagtggatggacaaaagggggagctgggtgatgttggacctcctggatctccagga
cagccattgttggttgggccgcctgattttttcctggttaaaggagaaaagggtgtaaaa
ggaatgcctgggttggtaggacccaaaggatcacatgggcccaaaggtgcacctggaaat
ggagagaagggtgaaaaaggtattcctggagaccctggaatgcagggtagccctggttct
tgtggatctctaggttttccaggaataaagggggcaagtggagttcctggtgttcctggt
caggctggttatgctggtctaaagggggatcgtggagaacgagggcaaccaggcctgcct
ggagtttttggaacaccacctgttgctatgaaaggttctcgaggggatcctggattacca
ggtccttctggagatgatgggttgattggactaactggtcctccaggcccatcaggaaga
cctggtgaagatggaacaagcctccctggtctgccaggagcatgtgggcaacaaggtcct
aaaggttcgcacggggatcctggtctccctggaactgctgaatcaactccaggaagacca
gggtctccaggagcaccaggattaccaggagcaccaggaagacagggtttgcctggacca
cctggtatagtttgtcatggcagaggtctccgtggacatcaaggaataaaaggccaaatg
ggacccctgggaagaagaggtgaaaaaggcgaaaaagggaatcatggccactgttcatgt
gaccttggttctgctggcccacctggtacacaagggccacctggtcgtcaaggaaggaaa
ggacagatgggatttcctggaagctatggagaaaagggtgatccaggtttctctggcaca
ataggatcaacaggactcccaggcaagcctggttcttctggaatagctggtgaaaaagga
gaaaagggtgacctggccatagtgaaaatcaaaggaataaaaggaaaaagaggccctcta
ggggttccaggacttacaggccaaaaaggtactgctggcagagatggagatccaggattg
cctggagagagaggaattcaaggtgatggtggatcagcactgccaggtgataaaggattt
cttggggcaccaggacttcctggttcaagagggcctatgggaccatcaggtttgggattt
cctggcccacagggaatcaggggtcatcctggagacccaggaagtactggcataagtgga
ccacctggtctaaagggtcaaagaggtgacatccactgttatgttccaccatatcctgga
agtccaggccctccaggttttcaaggggctcaaggaccaaagggattaagaggaccccct
ggtcctcctgggccaaatggctttgatgggcaaaagggccaacgaggcaaaccaggaaca
tcaggagatatagggccagatggctttcgaggcaatcctggtgatccaggtgatgaaggt
gaaagaggttcttcccctgatggtgccccaggtttccctggcagtcctggactttcaggt
cagaaaggtgttccaggtgataccagttatggtcttccaggaattccaggccacagagga
ttgccaggattacctggtttacaaggaatacgaggtgaatcaggcactcctgggccacaa
ggacagtctggcagaccaggatttccaggtgctacaggtctgagaggcagaaaaggtgaa
ataggagctccaggttcacccggtcagccatgtgataaaggcttacaagggccaccagga
cagctaggagttcttggacagcgaggccctccaggcttaccaggttttaaaggtcagaaa
ggagacatgggcccaccagggccagctggaatgaaaggcctaccaggatctcctggtgta
ccagggtcccctggtcctccaggccctcgaggatatccagggcttcctgggagcaatgga
ttacctggactcccaggccaacgaggtagcaaaggcatccaaggcatccaaggtttccca
ggaatctcaggaaaaggcggacagacaggaatcccgggtggacctggtgaacaaggagaa
atgggctcaagggggccttctggagaatgtggggatggagggcaaaaaggtgaaagaggt
gctcaaggagacagtggcttcattaccttatggctggaaaaaggacaaaagggggaacaa
gggcttcctggtgcggctgggtttccaggggaaacaggtgaaaaaggcagtcttggaatc
agagggatcccaggatttccaggcaaagatgggctcccaggaactcagaagggtgaacct
ggggatcgtgggcagattgggtttccagggctgccaggctccccaggattgggaggttta
agaggaattactggttttcaaggacaaccaggtgcccagggtgagcgaggtttaccagga
attcctggatatccaggccgtgatggtgcaaaaggacttaaaggtaacagaggtgactcg
ggcagtcaatatggtccacctggtcaaagaggtcctccaggagatcgtggatcaccagga
ccctgtggattcccaggagagcaaggtttaccaggtttccaaggggaacctggaagacaa
ggacccaaggggatgcctggatccccaggagcaaaaggctttccaggtgctatatgtgat
ttgggattgccaggagttccaggtggacaaggcaataccgggcctttaggagctgcagga
ttgccaggatcacctggtcccctaggcaggaaaggtttatcagggttgcctggattagat
ggcttgaatggactgcaaggtcaaaagggctcaccaggagatccaggtaaaagtgaaata
gggcctccaggatacacaggggcccctggaccaaaaggagacaagggtgaacctggacag
ccaggaatttctcttccaggacctcctggagacacgggtttgccaggacacccaggtaga
acaggagataccgggcctgcaggatctgtgggaagatctcctgaaactgcagcttctggt
cctccgggtgatcaggggccacctggctcacatggcatcagaggcctgcctggcaatcct
ggccctcctggaaagactatctttgtgaaaggcgatccgggggaatttggtgttccaggt
gcacccggtattcctggccagtcagggcagcaaggagccaaaggctttccaggaaatcaa
ggaagaagaggcctgaaaggtccgacgggaagccctggcccccagggtccccctggccct
gttgggccatctggggatcgaggttttcaaggacaacctggccctcgaggtcctgaaggt
gaccctggtgaaccaggaaaaacagaacactccccatgtcccaagacaccaggtcctcgt
ggagtaataggacaaagaggagctgaagggtctgtaggatttccagggccaataggttac
cctggacccccaggaagtaaaggtgaagaagggttgtttggcttgccaggtcaagatggc
tcacctggtccaccaggaccctcaggtgaccaaggtgtcataggagaacgaggatacact
ggtccagaaggtccacctggccaagccggaatcccaggaccaccagcgcctgaaacgaga
gctgctagtgggttcctgctcattcttcacagtcagtcagataaagaaccattttgtcct
gagggaatgccaagattgtggacaggatatagtctgctatatctggaaggacaggagaaa
gctcatgatcaagatcttggcctggcaggatcctgtcttcctgtattcaacaccatgccg
tttgtcttctgcaacatccaccaagtttgtaactatgccagtcgaaatgataagtcctac
tggctgtcagctgctgctcctttaccaatgatgcctctctctgaagatgaaatacaaccc
tacattagcagatgtgctgtatgtgaggcttcagcccaagctgtagcagtccatagccaa
gatcagtccattcccccatgcccattgaactggagaagtctttggataggctattctttt
ttaatgcacactgggtctggagatcagggaggcggacagtctcttatgtcaactggaagt
tgccttgaagactttagatcagcaccattcatcgaatgccagggtcagcggggaacatgt
caattttttgctaatgaatatagcttctggttaacaatcgtcaggccagaattgcagttt
gtctctgcgtctctgtcagaaacccttaaagacgggcatgaacagcgcaaaaaaattagc
agatgtcaggtctgcatgaagcatgggtaa
DBGET
integrated database retrieval system
