KEGG   Caretta caretta (Loggerhead turtle): 125643052
Entry
125643052         CDS       T09292                                 
Symbol
POLR2D
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4 isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
ccay  Caretta caretta (Loggerhead turtle)
Pathway
ccay03020  RNA polymerase
ccay03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccay00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125643052 (POLR2D)
  09124 Replication and repair
   03420 Nucleotide excision repair
    125643052 (POLR2D)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccay03021]
    125643052 (POLR2D)
   03400 DNA repair and recombination proteins [BR:ccay03400]
    125643052 (POLR2D)
Transcription machinery [BR:ccay03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     125643052 (POLR2D)
DNA repair and recombination proteins [BR:ccay03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125643052 (POLR2D)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 125643052
NCBI-ProteinID: XP_048721080
LinkDB
Position
9:47094456..47104680
AA seq 142 aa
MAAGGGEARVADVEEDASQLVFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggccggaggcggcgaggcccgggtcgcggacgtggaggaggacgcctcgcagctc
gtcttccccaaagaatttgaaactgctgagacgcttctaaattcagaagtgcacatgctt
cttgagcatcgtaaacaacagaatgagagtgctgaggatgagcaggagctttcggaagtc
ttcatgaaaactctgaactacacggctcgcttcagccgcttcaaaaaccgggagaccatt
gccagcgtccgcagtttgttgctccagaaaaagctccataaatttgaattggcgtgtttg
gctaatttgtgtcctgagacagctgaggaggccaaggctttgattcccagcctagagggc
cggtttgaagatgaggagctacagcagattcttgatgacattcagaccaaacgaagcttc
cagtactag

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