Caretta caretta (Loggerhead turtle): 125643135
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Entry
125643135 CDS
T09292
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04382
Cornified envelope formation
ccay04510
Focal adhesion
ccay04512
ECM-receptor interaction
ccay04518
Integrin signaling
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125643135 (COL4A6)
04518 Integrin signaling
125643135 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125643135 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125643135 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125643135 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125643135 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125643135 (COL4A6)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125643135 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125643135 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125643135
NCBI-ProteinID:
XP_048721254
LinkDB
All DBs
Position
9:74168822..74360200
Genome browser
AA seq
1702 aa
AA seq
DB search
MHTGLVVLVAFCLAVELVTGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGSIGNQGPI
GVPGFAGPEGLAGPKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFP
GLDGCNGSIGSPGVSGLDGFPGTQGPPGRFGPKGPKGEPAYAQGGLKGSKGENGLPGLDG
ISGAKGFPGPAGSVGPIGLPGLQGPPGAMGPPGPKGNMGLGFQGEKGAKGDVGLPGPAGP
PPSTGILEFMGFPKGKPGAKGEPGPKGFPGIGGLPGPLGFGGIGEKGEKGIPGLPGGRGF
LGLDGSDGFPGRKGQFGLPGFPGLDGVQGMKGELGEMGPPGPLISLDREDGLVSGLPGDP
GIPGTPGPRGDEGIVGLPGLPGTRGLSALVRGAPGLMGFPGIPGITGEPGDQGRATIGLP
GTPGIGGLPGMPGPPGLPGPSQILNGEPGEPGRPGQRGPPGVLGLKGTKGDPGDCACDGG
VTGAGPKGAPGPLGPPGSPGEPGFKGSSGDPGSVGAQGPRGPPASPGQPGSPGRKGEKGD
PSFARGRGLRGDPGATGARGPSGIPGTPGRDGFPGLPGQPGPPGDGGLGFPGEKGLPGLP
GSKGRRGESGLPGIGFPGPSGVRGPPGDPGMDGFPGQPGLPGPPGDCCCGEKVGKGVLDT
EGGITLPCVVPGGFGAPGPPGIPGRPGPKGRPGFPGIPGQPGLRGSKGQPGIPGSMALPG
APGFPGPRGDQGPQGLPGLDGTDGFPGKMGTPGLSGAKGAPGEVFGAERGALGERGRLGF
PGDKGLVGEPGFPGQKGVNGRPGLPGFKGERGNPGLPGIDGLRGPPGPGGPFGIKGEPGP
RGAVGFSGSPGLPGVKGPTGDAGPPGPAGMKGFPGLEGFPGPPGDRGFPGSPGPLGKDGR
PGFFGAKGEKGPPGLIGFPGMPGLPGIPGVSGLKGIPGSAGREGNIGYSGPSGLKGDRGD
RGPPGLPVLRPPELALAFKGDKGDRGSPGLRGFPGPRGDKGFPGPRGQPGLPGPRGSPAT
DRGLPGDAGFPGLPGPPSLPGQKGQAGIIGLPGFPGESGSEGISGAPGFPGTVGFPGPKG
DPGESLGIPGGLGDKGERGDRGFPGERGKDGPKGEPGYPGSTGLDGPKGVPGDLGQEGPP
GLPGIAGLRGNAGLPGSPGLPGPVGFIGLPGIAGPKGFPGFPGLNGLNGLPGTKGSPGTP
GLSEAGLNGPAGLPGPKGEEGSPGIGLGAPGLPGQKGSSGDMGLPGTLGLPGLPGPPGIS
LPSNIPGRRGDSGRPGVDGNPGPPGPPGPRGLSGPASNQGDTGLPGLPGVPGLPGIKGDI
GLPGPTGIPGASGLKGVKAEPGFMGMPGKDGLPGDPGIPGLKGETGRRGFPGLPGAPGLV
PKPEEVIVPPGLPGLPGIDGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGPDGT
VGDPGTPGIPGPPGLEGVSGKPGLFGLPGMPGRSVGVGYTLVKHSQSEQIPPCPIGMNKL
WEGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTA
PIPMMPVSRLEIPQYISHCSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAA
GAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVGAPPS
ETLKAGQLRTRVSRCQVCMKNL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagggcttgttgttctggttgctttctgcctagctgtggaactggtgactggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcgggctgcaaa
tgttttccagagaaaggtgctcggggtcgaccgggatctattgggaaccaaggacctata
ggtgttccaggatttgctgggccagaaggtttggcagggccaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagtgcctgga
tttcaaggcatcaatgggattccgggccaccctggccagccagggcccagaggttttcct
ggccttgatggctgcaatggttctattgggagtcctggtgtttccgggttggatgggttt
cctggtacacaagggccacctggtcgctttggtcccaagggtcccaaaggagaacctgca
tatgcccaaggtggccttaaaggaagtaagggtgaaaatggtcttcctggattggatggg
atttctggtgcaaaaggtttccctggtccagcaggttctgtgggtcctataggattgcca
ggtttgcaggggccaccgggtgcaatggggccaccaggaccaaaaggtaacatgggatta
ggtttccaaggagagaaaggtgcaaagggagatgtcgggctacctggccctgcaggtccc
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagcaaag
ggtgagccaggccctaaaggattccccgggattggaggattacctggccctctgggcttt
gggggtatcggagaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggtttccagggagaaagggtcagtttggtctccctggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttctctcgatagagaagacggactcgtctcaggtttgccaggagatccc
gggattccagggactccaggccctcgaggagatgaagggattgttggtttaccaggcctt
cctggcacccgaggtctctcagctcttgttcgaggggcaccaggtctcatgggatttcca
ggtattccaggtattactggtgaaccaggagaccaagggagagcaacaattggattacca
ggcactccaggcataggtggtttaccgggtatgccaggacctccaggactgcctggccca
tcacaaatcctcaatggagaacctggggaaccaggaagacctggacaacgggggccacca
ggagttttgggactaaaagggaccaaaggggatccaggtgattgtgcttgtgatggagga
gtcacaggagctggaccaaaaggtgcaccaggccctctgggtccaccaggtagtcctggt
gaacctgggtttaagggttctagtggagatcctggcagtgtgggtgcacaagggccgcga
gggcctccggcttcacctggtcaaccaggttctccaggccgtaagggagaaaaaggagat
ccatcttttgcaagaggcagaggtctccggggggatcctggtgcaacaggagccagaggg
ccttctggcatcccaggaactcctggcagagatggattcccaggtttaccaggccagcca
ggtcctccgggtgatggtggactaggctttccaggcgaaaaaggcctgccgggattacct
ggctccaagggccggcgtggggagagcggtcttcctggcattggtttcccaggtcctagt
ggagttcgcggccctccaggtgacccaggaatggatggttttccaggacaaccaggtctt
ccaggtcctccaggtgactgctgctgcggtgagaaggttggtaaaggagtcttagacaca
gagggagggatcaccttgccctgtgtagttcctggagggtttggtgcccctgggcctcca
ggcataccaggacgtccaggtcccaagggcagaccggggtttccaggcattccaggtcaa
cctggattacgtggatcaaaaggacaaccaggtattccaggatcaatggcattgccagga
gcaccgggctttcctgggcctcgtggagatcagggaccacaagggcttccaggacttgat
ggaacagatggtttccctggaaagatgggaactcctggcttgtcaggggcaaaaggagct
cctggtgaagtgtttggtgctgaaagaggagccctgggtgagcgtggcagacttggattc
ccaggagataaaggacttgttggagaacctggatttcctggacagaagggtgttaatgga
aggcctggcttaccgggttttaaaggtgaacggggtaatccagggctcccaggtattgat
ggattgcgaggacctcctggtcctggaggtccgtttggcattaaaggagaaccaggtccc
aggggagcagttggcttctcaggatcaccaggacttcctggagtcaaaggaccaactggt
gatgcaggtccaccaggccctgctggtatgaaaggcttcccaggtctagaaggttttcca
ggaccacctggggacagaggattcccagggtcacctgggcctttgggtaaagatggacgt
ccaggtttctttggagcaaaaggtgaaaagggtcctcccgggttgattggctttcctggc
atgccaggcctgcctggtatccctggggtgagtgggctgaaaggaattcctgggtcagct
ggaagggaaggaaatattggatattctggaccctctggtctaaaaggtgacaggggtgat
cgaggtccacctggactcccggttcttaggcctccagaattggcattggcattcaaggga
gacaaaggtgatcgtgggtcacctggactgagaggattccctggacctagaggtgataaa
ggattccctggaccccgtggacaacctggtcttcctggtccacgaggatcgccagccaca
gatagaggactacctggtgatgcagggttcccaggcctgcctggaccacccagcttgcca
ggacagaaaggacaggctggaatcataggattacccggatttccaggagaaagtggttca
gagggtatctcaggagcaccagggttcccaggaactgttggtttccccggtccaaagggt
gacccgggggaatcacttggaattcctggtgggttaggagataaaggagaacgaggggac
cgtggattcccaggtgagagggggaaagatgggccaaagggtgaaccaggatacccagga
agcactggcctggatgggcctaaaggtgtcccaggtgaccttggccaagaaggaccacca
ggcctccctggaattgctgggttgcgaggaaatgcaggtctcccgggttctccagggctg
cctggacctgtaggattcatcggactccctgggatagcagggccaaaaggattccctgga
tttcctggtttaaatggtctgaacggcttaccaggcacaaaagggtcacctggaacacca
ggtctgagtgaagctggactgaatggccctgcagggcttccaggtcctaagggtgaagaa
ggttccccaggcattggcctaggagccccaggactccctgggcagaaaggatcatcagga
gacatgggtcttccaggtaccttgggtctgcctggtttaccagggcctcctggcatctct
cttccttcaaatatacctgggagacgtggtgattctggccgtcctggagtggatgggaat
ccaggccccccaggtcctccaggtcctcgggggctctccggcccagcctccaatcaaggt
gataccggccttccaggtttacctggagttcctggtttgccaggcataaagggtgacata
ggactccctggtccaactggaattccaggagcttcaggactcaaaggtgtgaaggctgag
ccaggctttatggggatgccaggtaaagatgggcttccaggggaccctggaattcctggg
ctgaaaggtgaaactggccgtcgaggtttcccgggcctaccaggcgctccaggcctagta
ccaaaaccagaagaagtcatagttcctccagggctacctggtctgccaggaattgatgga
gtccctggctatgctggagatcgtggatttcagggaccagatgggcagcaaggtccaaaa
ggtctgtcaggcagatcaggtcaggtgggccgtcctggtttaccagggccagatggcaca
gttggggacccaggaaccccaggtattccagggccaccaggattggaaggtgtatcggga
aagccaggcctgtttggtttgcccggaatgccgggtcggagtgtaggcgttggatacact
ttggtgaagcacagccagtcagagcagatcccaccatgcccaattggaatgaataagctc
tgggagggttacagcttgctgtatgtggaggggcaggaaaaggcgcacaaccaggatcta
ggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatttactgcaacatc
tatgaggtgtgctactatgccagccgaaatgacaaatcctactggctctccaccactgct
cccatccccatgatgccagtgagccgtctggagatcccacagtacatcagtcattgctca
gtgtgtgaagcaccttcccaggctattgcagtacatagccaggacattaccatcccgcag
tgccccgagggctggcgcagcctgtggatcggatactctttcctaatgcacactgcagct
ggcgcggaaggcggaggtcagtcccttgtctcacccggctcttgcctcgaggatttccgt
gctactcctttcattgaatgcaatggtgccagaggaacctgccattactttgcaaacaaa
tacagcttctggctgaccacagtcgaacgcacgcagcagtttgtcggtgctcctccctca
gaaactctgaaagcaggacagctccgaacccgagtcagccgttgccaagtgtgcatgaag
aacttgtag
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