Caretta caretta (Loggerhead turtle): 125643229
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Entry
125643229 CDS
T09292
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04382
Cornified envelope formation
ccay04510
Focal adhesion
ccay04512
ECM-receptor interaction
ccay04518
Integrin signaling
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125643229 (COL4A5)
04518 Integrin signaling
125643229 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125643229 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125643229 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125643229 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125643229 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125643229 (COL4A5)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125643229 (COL4A5)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125643229 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125643229
NCBI-ProteinID:
XP_048721475
LinkDB
All DBs
Position
9:complement(74022242..74168501)
Genome browser
AA seq
1679 aa
AA seq
DB search
MERRGCRRLAAACLVLLGLWGLSAEAAACHGCTSGSKCDCSGVKGEKGERGFPGLEGQPG
LPGFPGPEGPPGPRGIKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLSGQKGDPGFPGLPG
LPGPPGPLGVQGPIGPPGPPGLTGPPGPTGLPGPKGNMGLNFQGPKGEKGDQGLQGPPGP
PGQIGEQKRPTDIEFQKGDQGIPGERGPPGPPGPQGPPGPSGGVKGEKGEQGEPGKRGKP
GKDGDPGQPGRDGLPGEPGLNGVPGRDGEKGLKGERGLPGPPGVITGNGVEVGPKGNKGL
PGFPGPKGERGYPGLQGPPGLSGPPGIAVVGPPGPPGLPGERGQKGDQGLPGVSIPGQPG
LDGRPGPPGPPGAPGPPGTTIPPSDRVCQRGPPGFPGPSGDKGFMGERGQKGDKGETCFN
CIGTGISGPPGDRGPPGPPGSPGSPGFPGSKGEKGLTGLTGLVGPPGFPGPPGAPGRPGS
KGDPGDSLAFPGLKGDKGDTGFPGPPGLPGIDGSPGREGLPGLPGSKGEPGGVAFKGGMG
PPGDPGVSGLPGDRGPMGPPGFGPQGPTGEKGIQGVSGRPGPPGVPGPKGEPGETITESG
VPGSPGSPGRNGEVGLPGDPGLPGQPGLSGIPGPKGDPGIPGIGLPGPPGLKGFPGMAGP
PGAPGAPGRPGLEGPPGQSGFPGQKGDPGFGVPGPPGPPGPPGFKGVPGLKGDPGFPGNP
GFPGQSGSDGTPGPKGDPGASGPPGLVGPPGFPGIGGQGPPGQPGPPGPVGPPGLQGVPG
EKGDPGPPGFDIPGPAGDRGSPGFPGTPGLIGPPGSPGPPGRDGISGFPGAKGEMGVMGA
PGPQGPPGTPGRNGLPGPKGSDGLPGQPGPSGLAGQKGTKGETGLPGPPGQVDPSQLGSK
GEKGEPGIPGISGVSGQKGYQGLPGDPGPPGFNGQPGAPGLSGPKGEPGLPGQSGPAGPP
GQKGAMGETGLPGIPGIKGFQGIAGRPGQPGPPGFPGLKGEKGNPGLSDIGIPGPKGDTG
FPGYPGNPGSKGTPGNPGLAGLPGNPGAKGEAGLPGFPGTPGIPGPKGIDGPPGNPGLPG
SPGPPGDVGRPGTPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGLSGQKGE
MGLPGLPGAPGLTGLKGEPGFQGFPGLQGPQGPPGLPGPPMEGLKGSPGPQGVPGRPGLP
GPEGPRGPPGNGGFKGEKGKPGQPGQPGLPGLKGDQGPPGRQGDPGRPGLNGMKGDPGVP
GVPGFPGMKGPIGPPGAIGFKGDQGPSGPPGPPGLPGPSGQTIVVKGDSGPPGPPGQPGL
SGPPGLSGPPGLPGPIGLPGDPGRDGLPGFDGPGGRKGERGLPGQPGFQGTQGPPGPDGL
QGPPGPPGTASVAHGFLITRHSQTTDTPLCPQGTIRIYDGFSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQSIQPFISRCAV
CEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYANSYSFWLATVEISEMFSKPQSETLKAGDLRTRISRCQVCMKRT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggagcggcggggctgccgccgcctggccgccgcctgcctggtgctgctggggctctgg
gggctgagcgcagaggctgcggcttgccatggatgtacatcaggatccaaatgtgactgt
agtggagtaaaaggcgaaaagggcgagagggggttcccagggttagaaggtcagcccggt
ttacccgggtttccgggaccagagggacctcctggcccaagaggcataaagggtgatgat
ggccttccagggcctactggacccaaaggaatcagaggtcctccaggtctgccaggattt
ccaggaacaccaggacttcccgggttaccagggcaggatgggccaccaggacttcaaggt
atccccggatgcaatggaacaaagggggaacgtggattcccaggcagtccaggttttcca
ggtttacaaggtcctcctggacctcctggcctaccaggtatgaagggcgatccgggtgaa
ataattctgtcatcactgtcaggccagaaaggtgacccaggatttccaggacttccaggg
ttaccaggtccacctggtcccttgggcgtacaaggtcctattggtccccctgggccacca
ggtttaacgggacctcctggtccaacagggcttccagggcctaagggtaatatgggtttg
aacttccaaggacccaagggtgaaaaaggtgaccaaggccttcagggacctccagggcca
ccaggacaaattggggaacagaagagaccaactgacatagagtttcagaaaggagatcag
ggtattccaggagaacgaggtccaccaggaccccctgggccacaaggtcctcctggtcct
tcaggtggcgtgaaaggtgaaaaaggtgagcaaggagagccaggcaaaagagggaaacct
ggcaaagatggagatcctggtcagcctggtagggatggtttacctggtgagcctggttta
aatggtgttccgggaagagatggtgaaaagggtctgaaaggtgaacgtggtctgcctggt
cctcctggagtgatcacaggaaatggtgtagaagtgggaccaaaagggaataaaggactt
ccaggatttccaggacccaaaggcgagcgtggatatcctggcttgcaagggcctcctggc
ttgtcagggcctccagggattgcagttgtaggcccccctggtccacctggtttgcctggg
gagcgaggacagaagggggatcaaggtctacccggagtttccatacctggacagcctgga
cttgatggacggccagggccacctggacctccaggtgcccctggacctcccggaacaact
atccctcctagtgacagagtatgtcagcgagggcccccgggttttccaggaccttcagga
gacaaaggttttatgggggagcgaggccagaaaggtgataagggagagacatgctttaat
tgtataggaactggcatttctgggcctccgggggacaggggaccacccggacctccaggt
agcccaggatctcctggtttcccgggatcgaaaggtgaaaaagggctaactggcttaacc
gggctggtagggccaccaggatttccaggacctccaggtgcccctgggcgtcctggttct
aaaggggaccctggggacagcctggctttcccaggactgaaaggtgacaaaggggacact
ggtttcccaggacctcctggtcttcctggcatagatggctctcctggacgagagggactg
ccaggtcttcctggatccaagggggaacctggtggtgttgctttcaaaggaggaatggga
cctccaggtgatccaggagtgtcaggtcttcctggagacagaggacctatgggacctcct
ggttttggcccacaaggtcctacaggtgaaaaaggcattcaaggtgtatcgggtcgccca
gggcccccaggagttccaggtccgaaaggtgaacctggcgaaactattacagaatcagga
gttccaggctcccctggatctccaggaagaaatggtgaagtaggacttcctggtgatcct
ggtctgccaggtcagcctggcttgtcaggcatcccaggtcctaagggtgatccaggtata
cctggcattggacttccaggaccaccaggcctaaaaggcttcccaggaatggctggcccc
ccaggagcaccaggagcccctggacgaccagggcttgaagggccaccaggacaatctggt
ttcccaggacaaaagggggaccctggatttggtgtcccgggaccacctgggccaccaggg
ccaccgggttttaaaggagttccgggactgaaaggtgatcctggcttcccaggaaaccct
ggttttccagggcagtcaggttctgatggaactcctgggccaaaaggtgaccctggagca
agcggaccacctgggttagtgggacccccagggttcccaggaattggtggtcaaggtcca
cctggacaacctggccctccaggacctgtgggcccaccaggattacaaggagttccaggt
gagaaaggagatcctggccctcctggattcgacatccctggtccagctggtgacagaggc
agtccgggatttccaggaacacccggtctcattgggcctccaggttcaccaggaccacca
ggacgagatggaatatcaggatttccaggtgccaaaggtgagatgggtgtgatgggagct
ccaggtccacaaggccctcctggaactcctggcagaaatggccttcctggtcctaaaggc
agtgatggtttaccaggtcagccaggaccttctggactggcagggcagaaaggcaccaaa
ggtgaaacaggcctgccaggtccccctggacaagttgatccaagccagctgggatcaaaa
ggagagaaaggcgagccaggcattccaggtatttctggagtatcaggccagaaaggttat
caaggtcttccaggtgacccagggccacctggattcaatgggcaaccaggtgcaccagga
ttgtcaggccccaagggagagccagggcttcctgggcagtcaggaccagcaggacctcca
ggacaaaaaggtgccatgggagagacggggcttccaggtatcccaggtattaaaggcttt
caaggcatagcaggacgtcctggccagcctggccctccaggatttccaggattaaagggg
gagaaaggcaacccaggtctttcagatattggaatccctggtcctaagggtgacactggt
ttccctggatacccaggtaaccctggcagcaaaggtacacctggaaatcctggtttggct
ggattacctggtaatccaggtgcaaaaggagaagcaggccttcctggattcccagggaca
ccaggaattccaggaccaaaaggtattgatggacccccaggtaatcctggtctccctgga
tcacctgggccaccaggtgatgttggccgtcctggcaccccaggtcttccaggggagaaa
gggcagccaggtcgggatggtattcctggaccagctggacagaagggtgaaccaggtcag
ccaggttttgggcgcccaggacctcctggactcccaggattatcagggcaaaagggcgag
atgggattacctggccttccaggagcccctggacttacaggtttgaagggtgaaccaggt
ttccagggattccccggtctacaaggtccacaaggtccaccaggcctgcctgggccacct
atggaaggtcttaaaggtagtcctggtccacaaggtgtaccggggagaccaggtctgcca
gggccagaaggtccacggggtccccctggaaatggaggatttaaaggagaaaaaggaaag
ccaggtcagcctggccagcctggcctccctggtctaaaaggagatcaaggaccacctgga
cgccagggtgatcctggtcgtcccggcctgaatggaatgaaaggtgatcctggggttcca
ggtgttccaggatttccaggtatgaagggccccattggacctccaggagcaattggtttt
aaaggtgatcaaggcccatcaggtccaccaggtccaccaggcttacctggcccttctgga
caaaccattgtagtaaaaggtgactcaggtcctccaggtccaccaggccagcctggattg
tcaggcccaccaggattgtcaggtccaccaggattgccaggtccaataggccttccaggg
gatcctgggcgagatggacttcctggatttgatggtccaggaggacgtaaaggcgagaga
ggacttccagggcaaccaggctttcaaggtacgcagggaccccctggtcctgatggcttg
caaggcccaccaggtcctcctggaacagcttctgttgctcatggattccttataactcga
cacagccagactacagacacaccactgtgcccacaaggaacaataaggatatacgatgga
ttttctcttctgtacgttcagggaaatgagagagcccatggccaggacttaggcactgct
gggagctgtctccgccgtttcagcaccatgcccttcatgttctgtaacatcaacaatgtg
tgtaattttgcatcaagaaatgattattcctattggctgtccactccgaagccaatgcca
atgagcatggagccactgactgggcagagcattcagccattcattagccgatgtgcagta
tgtgaagctcctgccatggttatagctgtccatagtcagaccattcaaattccgtcatgt
ccgcaaggctgggactctctttggattggttattctttcatgatgcacacaagtgctggt
gcagagggctctggacaggccttggcatccccaggttcctgtttggaagaattccgctca
gctccttttattgagtgtcatggtcgtggtacttgtaattactacgccaattcatacagt
ttctggctggcaactgtagagatatcagaaatgtttagtaaacctcagtcagagacattg
aaagctggagacctgaggacacgtattagtcgttgtcaagtttgtatgaagaggacgtaa
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integrated database retrieval system
