Caretta caretta (Loggerhead turtle): 125643229
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Entry
125643229 CDS
T09292
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay04510
Focal adhesion
ccay04512
ECM-receptor interaction
ccay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125643229 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125643229 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125643229 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125643229 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125643229 (COL4A5)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125643229 (COL4A5)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125643229 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125643229
NCBI-ProteinID:
XP_048721475
LinkDB
All DBs
Position
9:complement(74022242..74168501)
Genome browser
AA seq
1679 aa
AA seq
DB search
MERRGCRRLAAACLVLLGLWGLSAEAAACHGCTSGSKCDCSGVKGEKGERGFPGLEGQPG
LPGFPGPEGPPGPRGIKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLSGQKGDPGFPGLPG
LPGPPGPLGVQGPIGPPGPPGLTGPPGPTGLPGPKGNMGLNFQGPKGEKGDQGLQGPPGP
PGQIGEQKRPTDIEFQKGDQGIPGERGPPGPPGPQGPPGPSGGVKGEKGEQGEPGKRGKP
GKDGDPGQPGRDGLPGEPGLNGVPGRDGEKGLKGERGLPGPPGVITGNGVEVGPKGNKGL
PGFPGPKGERGYPGLQGPPGLSGPPGIAVVGPPGPPGLPGERGQKGDQGLPGVSIPGQPG
LDGRPGPPGPPGAPGPPGTTIPPSDRVCQRGPPGFPGPSGDKGFMGERGQKGDKGETCFN
CIGTGISGPPGDRGPPGPPGSPGSPGFPGSKGEKGLTGLTGLVGPPGFPGPPGAPGRPGS
KGDPGDSLAFPGLKGDKGDTGFPGPPGLPGIDGSPGREGLPGLPGSKGEPGGVAFKGGMG
PPGDPGVSGLPGDRGPMGPPGFGPQGPTGEKGIQGVSGRPGPPGVPGPKGEPGETITESG
VPGSPGSPGRNGEVGLPGDPGLPGQPGLSGIPGPKGDPGIPGIGLPGPPGLKGFPGMAGP
PGAPGAPGRPGLEGPPGQSGFPGQKGDPGFGVPGPPGPPGPPGFKGVPGLKGDPGFPGNP
GFPGQSGSDGTPGPKGDPGASGPPGLVGPPGFPGIGGQGPPGQPGPPGPVGPPGLQGVPG
EKGDPGPPGFDIPGPAGDRGSPGFPGTPGLIGPPGSPGPPGRDGISGFPGAKGEMGVMGA
PGPQGPPGTPGRNGLPGPKGSDGLPGQPGPSGLAGQKGTKGETGLPGPPGQVDPSQLGSK
GEKGEPGIPGISGVSGQKGYQGLPGDPGPPGFNGQPGAPGLSGPKGEPGLPGQSGPAGPP
GQKGAMGETGLPGIPGIKGFQGIAGRPGQPGPPGFPGLKGEKGNPGLSDIGIPGPKGDTG
FPGYPGNPGSKGTPGNPGLAGLPGNPGAKGEAGLPGFPGTPGIPGPKGIDGPPGNPGLPG
SPGPPGDVGRPGTPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGLSGQKGE
MGLPGLPGAPGLTGLKGEPGFQGFPGLQGPQGPPGLPGPPMEGLKGSPGPQGVPGRPGLP
GPEGPRGPPGNGGFKGEKGKPGQPGQPGLPGLKGDQGPPGRQGDPGRPGLNGMKGDPGVP
GVPGFPGMKGPIGPPGAIGFKGDQGPSGPPGPPGLPGPSGQTIVVKGDSGPPGPPGQPGL
SGPPGLSGPPGLPGPIGLPGDPGRDGLPGFDGPGGRKGERGLPGQPGFQGTQGPPGPDGL
QGPPGPPGTASVAHGFLITRHSQTTDTPLCPQGTIRIYDGFSLLYVQGNERAHGQDLGTA
GSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQSIQPFISRCAV
CEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRS
APFIECHGRGTCNYYANSYSFWLATVEISEMFSKPQSETLKAGDLRTRISRCQVCMKRT
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggagcggcggggctgccgccgcctggccgccgcctgcctggtgctgctggggctctgg
gggctgagcgcagaggctgcggcttgccatggatgtacatcaggatccaaatgtgactgt
agtggagtaaaaggcgaaaagggcgagagggggttcccagggttagaaggtcagcccggt
ttacccgggtttccgggaccagagggacctcctggcccaagaggcataaagggtgatgat
ggccttccagggcctactggacccaaaggaatcagaggtcctccaggtctgccaggattt
ccaggaacaccaggacttcccgggttaccagggcaggatgggccaccaggacttcaaggt
atccccggatgcaatggaacaaagggggaacgtggattcccaggcagtccaggttttcca
ggtttacaaggtcctcctggacctcctggcctaccaggtatgaagggcgatccgggtgaa
ataattctgtcatcactgtcaggccagaaaggtgacccaggatttccaggacttccaggg
ttaccaggtccacctggtcccttgggcgtacaaggtcctattggtccccctgggccacca
ggtttaacgggacctcctggtccaacagggcttccagggcctaagggtaatatgggtttg
aacttccaaggacccaagggtgaaaaaggtgaccaaggccttcagggacctccagggcca
ccaggacaaattggggaacagaagagaccaactgacatagagtttcagaaaggagatcag
ggtattccaggagaacgaggtccaccaggaccccctgggccacaaggtcctcctggtcct
tcaggtggcgtgaaaggtgaaaaaggtgagcaaggagagccaggcaaaagagggaaacct
ggcaaagatggagatcctggtcagcctggtagggatggtttacctggtgagcctggttta
aatggtgttccgggaagagatggtgaaaagggtctgaaaggtgaacgtggtctgcctggt
cctcctggagtgatcacaggaaatggtgtagaagtgggaccaaaagggaataaaggactt
ccaggatttccaggacccaaaggcgagcgtggatatcctggcttgcaagggcctcctggc
ttgtcagggcctccagggattgcagttgtaggcccccctggtccacctggtttgcctggg
gagcgaggacagaagggggatcaaggtctacccggagtttccatacctggacagcctgga
cttgatggacggccagggccacctggacctccaggtgcccctggacctcccggaacaact
atccctcctagtgacagagtatgtcagcgagggcccccgggttttccaggaccttcagga
gacaaaggttttatgggggagcgaggccagaaaggtgataagggagagacatgctttaat
tgtataggaactggcatttctgggcctccgggggacaggggaccacccggacctccaggt
agcccaggatctcctggtttcccgggatcgaaaggtgaaaaagggctaactggcttaacc
gggctggtagggccaccaggatttccaggacctccaggtgcccctgggcgtcctggttct
aaaggggaccctggggacagcctggctttcccaggactgaaaggtgacaaaggggacact
ggtttcccaggacctcctggtcttcctggcatagatggctctcctggacgagagggactg
ccaggtcttcctggatccaagggggaacctggtggtgttgctttcaaaggaggaatggga
cctccaggtgatccaggagtgtcaggtcttcctggagacagaggacctatgggacctcct
ggttttggcccacaaggtcctacaggtgaaaaaggcattcaaggtgtatcgggtcgccca
gggcccccaggagttccaggtccgaaaggtgaacctggcgaaactattacagaatcagga
gttccaggctcccctggatctccaggaagaaatggtgaagtaggacttcctggtgatcct
ggtctgccaggtcagcctggcttgtcaggcatcccaggtcctaagggtgatccaggtata
cctggcattggacttccaggaccaccaggcctaaaaggcttcccaggaatggctggcccc
ccaggagcaccaggagcccctggacgaccagggcttgaagggccaccaggacaatctggt
ttcccaggacaaaagggggaccctggatttggtgtcccgggaccacctgggccaccaggg
ccaccgggttttaaaggagttccgggactgaaaggtgatcctggcttcccaggaaaccct
ggttttccagggcagtcaggttctgatggaactcctgggccaaaaggtgaccctggagca
agcggaccacctgggttagtgggacccccagggttcccaggaattggtggtcaaggtcca
cctggacaacctggccctccaggacctgtgggcccaccaggattacaaggagttccaggt
gagaaaggagatcctggccctcctggattcgacatccctggtccagctggtgacagaggc
agtccgggatttccaggaacacccggtctcattgggcctccaggttcaccaggaccacca
ggacgagatggaatatcaggatttccaggtgccaaaggtgagatgggtgtgatgggagct
ccaggtccacaaggccctcctggaactcctggcagaaatggccttcctggtcctaaaggc
agtgatggtttaccaggtcagccaggaccttctggactggcagggcagaaaggcaccaaa
ggtgaaacaggcctgccaggtccccctggacaagttgatccaagccagctgggatcaaaa
ggagagaaaggcgagccaggcattccaggtatttctggagtatcaggccagaaaggttat
caaggtcttccaggtgacccagggccacctggattcaatgggcaaccaggtgcaccagga
ttgtcaggccccaagggagagccagggcttcctgggcagtcaggaccagcaggacctcca
ggacaaaaaggtgccatgggagagacggggcttccaggtatcccaggtattaaaggcttt
caaggcatagcaggacgtcctggccagcctggccctccaggatttccaggattaaagggg
gagaaaggcaacccaggtctttcagatattggaatccctggtcctaagggtgacactggt
ttccctggatacccaggtaaccctggcagcaaaggtacacctggaaatcctggtttggct
ggattacctggtaatccaggtgcaaaaggagaagcaggccttcctggattcccagggaca
ccaggaattccaggaccaaaaggtattgatggacccccaggtaatcctggtctccctgga
tcacctgggccaccaggtgatgttggccgtcctggcaccccaggtcttccaggggagaaa
gggcagccaggtcgggatggtattcctggaccagctggacagaagggtgaaccaggtcag
ccaggttttgggcgcccaggacctcctggactcccaggattatcagggcaaaagggcgag
atgggattacctggccttccaggagcccctggacttacaggtttgaagggtgaaccaggt
ttccagggattccccggtctacaaggtccacaaggtccaccaggcctgcctgggccacct
atggaaggtcttaaaggtagtcctggtccacaaggtgtaccggggagaccaggtctgcca
gggccagaaggtccacggggtccccctggaaatggaggatttaaaggagaaaaaggaaag
ccaggtcagcctggccagcctggcctccctggtctaaaaggagatcaaggaccacctgga
cgccagggtgatcctggtcgtcccggcctgaatggaatgaaaggtgatcctggggttcca
ggtgttccaggatttccaggtatgaagggccccattggacctccaggagcaattggtttt
aaaggtgatcaaggcccatcaggtccaccaggtccaccaggcttacctggcccttctgga
caaaccattgtagtaaaaggtgactcaggtcctccaggtccaccaggccagcctggattg
tcaggcccaccaggattgtcaggtccaccaggattgccaggtccaataggccttccaggg
gatcctgggcgagatggacttcctggatttgatggtccaggaggacgtaaaggcgagaga
ggacttccagggcaaccaggctttcaaggtacgcagggaccccctggtcctgatggcttg
caaggcccaccaggtcctcctggaacagcttctgttgctcatggattccttataactcga
cacagccagactacagacacaccactgtgcccacaaggaacaataaggatatacgatgga
ttttctcttctgtacgttcagggaaatgagagagcccatggccaggacttaggcactgct
gggagctgtctccgccgtttcagcaccatgcccttcatgttctgtaacatcaacaatgtg
tgtaattttgcatcaagaaatgattattcctattggctgtccactccgaagccaatgcca
atgagcatggagccactgactgggcagagcattcagccattcattagccgatgtgcagta
tgtgaagctcctgccatggttatagctgtccatagtcagaccattcaaattccgtcatgt
ccgcaaggctgggactctctttggattggttattctttcatgatgcacacaagtgctggt
gcagagggctctggacaggccttggcatccccaggttcctgtttggaagaattccgctca
gctccttttattgagtgtcatggtcgtggtacttgtaattactacgccaattcatacagt
ttctggctggcaactgtagagatatcagaaatgtttagtaaacctcagtcagagacattg
aaagctggagacctgaggacacgtattagtcgttgtcaagtttgtatgaagaggacgtaa
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