Caretta caretta (Loggerhead turtle): 125643318
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Entry
125643318 CDS
T09292
Symbol
TNRC6A
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccay03019
]
125643318 (TNRC6A)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125643318 (TNRC6A)
Messenger RNA biogenesis [BR:
ccay03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125643318 (TNRC6A)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125643318 (TNRC6A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125643318
NCBI-ProteinID:
XP_048721676
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Position
10:82864099..83053259
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AA seq
2020 aa
AA seq
DB search
MLGDAGCPGSGVSGGISLPVRRASAGPGQVRREAGNGGDAAAAAAGPPSSTVPGPGRLES
RRASAGPGPDSEHFTYMRELEAKATKEVERKLSRDLVQDEEEQLMEERKKRKEDKKKKEA
AQKKAIEQKIKVPEQTKTSVSQPQPVTSNVTSTATSTNNNAKRATANNQQQQTLPRYPPR
EVPPRFRHQEQKQLLKRGQQLPVIAANLGSTPKVFNSQSGGSAVTSKQPVTNGEVPNSSS
KKQSGMPPIRDLVSHSPNQSDLNHSGLGSHYENSHWGPVSSNSDSSTNWDKVIVDGSDKE
AWPSITGSDPELASECMDTDSASSSGSERNLIIMASGSTGGENDSIRNGIGHGSQNKFVV
GSNSNNVGNGSINGPWGISHGTIISTCQVSVDAPDSKSESSNNRMNAWGTINSASNGGLN
PSTLNSNGNHGAWPVLENNGHALKGSVGSGNSGTNIQCSTIGQKSNNQSINSKVGGSAHG
SWASLQENCDSEVNGTRKVSFSGQPQNLNTEMNGPNNTTNFMTSSLPNSAGSVQINELPN
NTGPGAWRVSTMNHSPIQASPVTNGTSTSHLSNGEAKNGGSYGTTWVAYGSNYSGDKCSD
PNSQANSDTVNATLTQPGINGPGSTNFQINGNKGGGVWEGGTVNSQNMPWGSANGVSSGG
SRRGWGNAAQNTGTSISNGEWNKLPSNQHSNESVNGNSRKFTNGWKSAEEDDLNSQNSAA
SQITEQNNVWAKTGTGDSEGSTESTGCHDDKVTAEGQNRERRKVDQHALLQSIVSRTDLD
PRVLSNTGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGGSVTQTSSSGGCVERPSPNV
NDTSSISGWGDPKSATRWGDSKGSNSQGGWEEDSAATVMVKSNQIWVNGKEDKSSWNDAQ
KIKQGWVDGQKASQGWAISANDSWGENSRSNHWGEAKKSSSGGSDSDRSVSGWNESAKSN
SVTWGSSNTNPNNASGWDEPAKSNPSQGWGEPPRSNQPQGWGDSSKPVNSPDWNKQQDVG
SWGAPSTTNKPPGSGWLGGPIPSPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKY
NYKNVNMWNKNVPNGSSGSDQQAQAHQQLLPSSAMSSKEGSNGSGWGEPSTPATTVDNGT
SAWGKPMDTGTSWGEPISDAAVTSGWGNASVSQQASSKPDYGRISGPKSMQDGWCGDDMS
LPGSRQTSWEEEDDVEIGMWNSSSSQEVNPSLNWPPYMKKMPTKGTMKGGNKQDETWINP
FIKQFTNLSFSVSMRESPEETIPSNKMDMSGGILQDKRIELDKHGLNVGDYNRVVGKGPG
SRPQISKESSMDRSPYFDKDGIVADESQNMQFISNQNMKLPPSNSALPNQALGSLAGLGM
QNLNSVRQNGNPSVFGVGNVAAQPRSMQQPPAQPLNSSQPNSRAQVPPPLLAPQVPVSLL
KYAPNNGGLSPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQKAQNQRSMPSSGRQQQ
EQQGRSLSMQQQMMQQSRQLDPNLLMKQQTPPSQQQPLHQPAMKSFLENVIPHATPELQK
GPSPINAFSSFPIGMNSNLNVNMDMSSIKEPQSRLRKWTTVDSISVNTSLDQNSSKHGAI
SSGFRLEDSPFVPYDFLNSSNSPASPPGSVGDGWPRAKSPNGSSSVNWPPEFRPGEPWKG
YPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTALPSTSAWSSIRASN
YSVSLSSTAQSTSVARNSDSKSTWSPGSVTNTSLAHELWKVPLPPKSITAPSRPPPGLTG
QKPPLSTWDNSLRLGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTL
CMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFF
AQGQSLTPSPGWQSFGSSQNRLGSIDGSHSFSNRNDLNHWNGAGLSGTSSGDLHGTSLWG
SPNYSTSLWGTPSSSDTRGISSPSPINAFLSVDHLGGESM
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atgttgggggatgctggttgccccggaagtggtgtttccggcgggatttctcttccggtg
cggcgggccagtgccggacccggccaagttaggagggaggcaggaaatggcggcgacgct
gctgcagcagctgccgggcccccgagctccactgtgccgggcccaggccgcctagagagc
cgccgcgccagcgccgggcccgggccggactccgagcactttacatacatgagagaattg
gaagctaaagctaccaaagaagttgaaagaaaactaagcagggatttagtgcaagacgag
gaagaacagttgatggaagaaaggaaaaagagaaaagaagacaagaaaaagaaggaagct
gctcaaaaaaaggccattgaacaaaaaatcaaagtgccagaacaaacaaagaccagtgta
agccagcctcagccggtcacctctaacgtcacttccacagcaaccagcactaataataat
gccaagcgggccacagccaacaatcagcagcagcagaccttgcctcgataccctcctcgt
gaagtaccaccgcgatttcgacaccaggaacagaaacagcttttaaagcgaggtcagcag
ttaccagtgatagctgcaaacctgggatccactcctaaagtattcaacagccagtcagga
ggcagtgctgtcacaagtaaacaaccggtgaccaacggagaagtgccgaacagcagcagc
aaaaaacagtcaggcatgcctcccattcgggacttggtcagccattcccctaaccagtca
gatctgaaccacagtggtctaggatcccattatgaaaattctcactggggaccagtctct
tcaaatagtgactccagcacaaactgggataaagttatcgtagacggttctgacaaagaa
gcatggccatcaatcacaggcagtgacccagagttggcttcagaatgtatggacactgac
tccgcctctagctctgggtcagagagaaatcttattataatggcttcagggagcacaggt
ggtgaaaacgatagcattcggaatggcattggacatggttctcaaaataagtttgtggtt
ggtagcaacagcaataatgtgggcaatggaagtattaatgggccatggggtatatcccat
ggaaccataataagcacatgtcaagtttctgtggatgctcctgacagcaaatctgaaagt
agcaacaatagaatgaatgcttggggcaccataaactctgcatcaaatggagggttaaat
ccaagcactttgaattcaaatggcaaccatggtgcctggcctgtattggagaacaatgga
catgccctgaaagggtctgtagggagtggtaattctggcacaaatattcagtgcagtacc
ataggtcagaagtctaacaatcagagtattaactctaaagtgggtggttcagcccatggt
tcctgggcaagccttcaggaaaattgtgattctgaagtgaatggtacaaggaaggtttca
ttcagtggacaacctcaaaaccttaacactgaaatgaatggaccaaataacactactaac
tttatgacctctagtttaccaaactctgctggttcagtacagattaacgaactgcctaat
aatacagggcctggggcctggcgtgtgagcacaatgaatcattctccgattcaggcctct
ccagttacaaatggcacttccacttctcatcttagcaatggtgaggcaaaaaatggtgga
tcttatggtactacgtgggttgcctatggttctaattactctggagacaaatgttcagat
ccaaacagccaagctaatagtgacactgtgaatgcaactctaacgcagcctggcatcaat
gggcctggcagcactaattttcaaatcaatgggaataaaggaggaggggtatgggaggga
gggacagtcaactcccaaaatatgccatggggaagcgcaaatggtgtgagttctggagga
agtcgaagaggatggggcaacgctgcacaaaacactggcactagcatttcaaatggggaa
tggaataaactgcctagcaatcagcattccaatgaaagcgtaaatggaaatagtaggaag
tttacaaatggatggaaatctgctgaagaggatgatcttaatagccagaattctgctgca
tctcagataactgagcagaacaatgtatgggccaaaacaggtactggggatagcgagggt
agtacagagagcactggatgccatgatgataaagtcactgcagaaggacagaaccgagag
agaagaaaagttgaccagcatgcattactccaaagcatagtgagcagaactgacttagat
ccacgtgtcctttccaacactggttggggacagactccaattaaacaaaacactgcctgg
gatactgaaacatcgccaagaggtgaaagaaagactgacaatgggacagaggcctgggga
ggctctgttacacagacttccagctcagggggatgtgtggagagacctagccctaatgtt
aatgatacctcatctatatcagggtggggagatccaaagtctgctacaaggtggggagac
tccaaaggctcaaacagtcaaggggggtgggaagaggattctgctgctacagtaatggtt
aagagcaatcaaatatgggtaaatggcaaagaggacaagtcgtcttggaatgatgcacag
aagatcaaacagggatgggtagatggacaaaaagccagccagggttgggcaatttctgcc
aatgacagctggggagaaaattcaagaagcaaccattggggtgaggctaagaaatctagt
tcaggaggtagtgacagtgaccgatcagtatctggttggaatgagtctgctaaatcaaat
tctgttacttggggaagtagtaatactaacccaaataatgcttctggatgggatgagcct
gcaaagtctaatccgagtcagggctggggagaacctcccagatcaaatcagcctcaaggt
tggggtgattcgtcaaagccagtcaactccccagactggaacaagcagcaagatgttgga
tcttggggagcaccatctaccacaaataaaccaccaggttctgggtggttgggtggacca
ataccaagtccagcgaaggaagaggaacccacaggatgggaggagccatccccagaatca
atacgccgtaaaatggaaattgatgatggaacttctgcttggggtgatccaagcaaatac
aactacaaaaatgtgaatatgtggaataaaaatgtcccaaacggcagcagcggttcagac
cagcaagcacaggcacatcagcagctactgccttcgagtgccatgtccagcaaggagggc
agtaatggttccggttggggagagccttctactcctgccactactgtagataatggaacg
tccgcgtggggtaaacccatggatactggtacgagctggggagagcccatcagtgatgca
gcagtcacgtctggctggggaaatgcttctgttagtcagcaggcttcaagtaaacctgat
tatggcagaatatcagggcctaaatctatgcaagatggttggtgtggtgatgatatgtca
ttgccagggagtcgtcagaccagctgggaggaagaagatgatgtagagattggaatgtgg
aacagcagttcatcccaagaagttaacccgtctttgaattggccaccgtacatgaaaaaa
atgcctacaaagggaacaatgaaaggtggaaataaacaagatgaaacatggataaatcca
ttcattaagcaattcacaaatctcagtttttcagtaagtatgagagaatcaccagaagaa
accataccgagcaataagatggacatgtctggaggaatattacaggataaacgaatagag
ttggataagcatggcctgaacgttggagattacaatcgggtggtaggaaagggccctggt
tctcgtcctcagatttccaaagagtcttccatggatcgcagtccttattttgataaggat
ggcattgtagcagacgagtcccaaaacatgcagtttatttccaatcaaaacatgaagctt
cccccttcaaatagtgcactacctaaccaagcccttggctccctagcagggctgggtatg
caaaacttgaattctgttagacagaatggcaatcccagtgtgtttggtgttggtaacgta
gcagcacagcccaggagcatgcagcagcccccagcacaacctcttaattcttcccagcct
aactcacgtgctcaagtgcctcctccattactcgcccctcaggttccagtatccttactg
aagtatgcaccaaacaacggtggcctgagtccactttttggcccacagcaggtagccatg
ttgaaccaactatcccagttgaaccagctttctcagatctcccagttacaacggttgttg
gctcagcagcaaaaagcgcagaatcagagaagcatgccttctagtggtcgtcaacagcag
gaacagcagggtcgatctcttagtatgcagcaacagatgatgcaacagtcccgtcagctt
gatccaaacctgttaatgaagcagcagactccaccatctcaacagcagccactccatcag
cctgccatgaaatctttccttgagaatgtcataccccatgctactcctgagctgcagaaa
gggccatcaccaataaatgcattcagcagcttccctataggaatgaactcaaacttgaat
gtaaacatggatatgagcagtattaaggagccgcaatcacgactgaggaaatggacaacg
gtggacagcatttctgttaacacctcattggatcaaaactccagcaaacatggtgctatt
tcaagtggttttaggctggaagattccccatttgttccatatgactttttgaacagcagt
aattcaccagccagtcctcctggatctgttggagatggctggccacgtgccaaatcgcct
aatggctctagcagtgttaactggccaccagaatttcgtcctggtgagccatggaaaggt
tatccaaacatcgaccctgaaactgacccttacgtcactcctggcagtgtcataaacaat
ctttcaattaatactgtgcgggaagttgaccacctcagggacaggaacagtgggtcatcc
tcatctttgaacaccgcgctgccttcaactagtgcctggtcatccattcgtgcctccaac
tacagtgtttccctcagcagtacagcacaaagcacttcagtagccagaaacagtgattcc
aaatcaacgtggtctcctggttcagtcactaacacctctctggctcatgagctgtggaag
gtccctttgccacctaaaagcatcactgctccatcccgtccaccaccagggctgacaggc
cagaaaccacctttgtccacatgggataactcccttcgtttgggtggaggatggggaaat
tctgatgccagatatacccctggttcaagctggggtgagagcagctcagggagaataacg
aattggcttgttctaaaaaaccttacacctcagattgatggctcaaccctgcgtactctg
tgcatgcagcacggtccactaataacattccaccttaacctcccacatggtaatgctttg
gtccgttacagttcaaaagaagaggtagtgaaggcacaaaaatctctgcacatgtgtgta
ttagggaacactactattctggctgagtttgccagtgaagaggagattagccgcttcttt
gcacaaggccagtctctgactccttctcctggctggcagtcttttggatccagccagaac
cgacttggatccattgatggttcccattcgttctccaaccgtaatgatctaaatcactgg
aatggtgctgggctgtcgggaactagcagtggagaccttcatggcacttcactttggggg
agccccaactattccacaagcctgtggggtaccccaagcagcagtgacaccaggggaatt
agcagcccatcccccatcaatgctttcctttctgttgaccacctaggtggagagtccatg
taa
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