Caretta caretta (Loggerhead turtle): 125643542
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Entry
125643542 CDS
T09292
Symbol
DSCAM
Name
(RefSeq) Down syndrome cell adhesion molecule isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccay04515
]
125643542 (DSCAM)
Cell adhesion molecules [BR:
ccay04515
]
Immunoglobulin superfamily
DSCAM family
125643542 (DSCAM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
Ig_5
C2-set_2
Pur_ac_phosph_N
Ig_4
V-set_CD47
Sp38
C1-set
Interfer-bind
Ig_C17orf99
fn3_2
C2-set_3
ChitinaseA_N
Adeno_E3_CR1
DUF6377
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
125643542
NCBI-ProteinID:
XP_048722259
LinkDB
All DBs
Position
1:158553297..159201999
Genome browser
AA seq
2008 aa
AA seq
DB search
MWILAIFLFQSILNVFSEDLHASLYFVNASLQEVVFASTTGTLVPCPAAGIPPVTLRWYL
ATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFNNLIHDNTYYCTAENPSGKIRSQDVHIKA
VLREPYTVRVEDQKAMRGNVAVFKCIIPSSVEAYITVVSWEKDTVSLVSGSRFLITSTGA
LYIVDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPANSAPSILDGFDQRKAMAGQ
RVELPCKASGHPAPKYRWLKDNVPWEPDSRFRQTVTGLLIENTRPSDSGNYVCEVWNNYG
TAEVIGHLHVKQPLKATISPRKVKSSVGSQVSLSCSVTGTEDQELSWYRNGEIINPGNNV
RIVGINRENLIMDGMAKSDGGAYQCFVRKDKMSAQDYVQVVLEDGTPKIISAFSEKVVSP
GEPVSLMCNVKGTPLPTITWTLDEDPIIKDGNHRISQIITSEGNVVSYLNISNTQVRDGG
VYRCTANNSAGVILYQARINVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKN
SDLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQ
PFEFPRFSIGQRVFVPCVVVSGDLPITITWQKDGRPIPASLGVTIDNIDFTSSLRIFNLS
LMHNGNYTCIARNDAAAVERQSQLIVRVPPRFVVQPSDQDGIYGKAVILNCSAEGYPVPT
IVWKYSKGAGVPQFQPIALNGRIQLLTNGSLLIKHVLEEDSGYYLCKVSNDVGADVSKSM
YLTVKIPAMITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK
EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIREVRARS
IALRWTMGFDGNSPITGYDIECKNKSDSWDSVQRTKDVSPQLNQATIIDLHPSSTYNIRM
YAKNRIGKSEASNELTVTTDEAAPDGPPQEVQLEPVSSQSIRVTWKAPKKHLQNGIIRGY
QIGYREYSAGGNFQFNIISIDTTGDSEVYTLDNLKKFTQYGMVVQACNRAGIGPSSQEII
TTTLEDVPSCPPGNVQATATSPETISISWSTLAKEALNGILQGFRVIYWANLLDGELGEI
KNVTTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAA
SPSTVFVSWLPPFKLNGVIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRHRQYSVW
VVAVTAAGRGNSSEIITVEPLAKAPARILTFSGTVTTPWMKDIILPCKAVGDPSPTVKWM
KDSNGTPSLVMIDGRRSIFSNGSFVIRTVKAEDSGYYSCVASNNWGSDEIVLNLQVQVPP
DQPRLTVSKTTSSSITLSWIPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYRLET
LKCGTWYKFTLTAQNGVGPGRISEIIEAKTLGKEPQFSKEQELFASINTTRVRLNLIGWN
DGGCPITSFTLEYRPFRTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQ
AKFATLNYDGSTIPPLIKSVVQSEEGLATNEGLKMLVTISCILVGVLLLFVLLLIVRRRR
REQRLKRLRDAKSLAEMLMSKNTRTSDTLNKQQQTLRMHIDIPRAQLLIEERDTMETIDD
RSTVLLTDADFGETSKQKSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTTRRNAKTGP
TARNRYASQWTLNRPHPTISAHTLTTDWRLPTPRAAGSVDKESDSYSVSPSQDTDRARSS
MVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQLTAGTNEYTDSLTS
STPSESGICRFTASPPKPQDGGRVMNMAVPKAHRPGDLMHLPPYLRMDFLLNRGVSGTSR
DLGLGQACLEPQKSRTLKRPTVLEPIPMETSSTREVQSWQPGAVATLPQREGAELGQAAK
MSSSQESLLDSRGHLKGNNPYAKSYTLV
NT seq
6027 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattggctatcttcttgttccagagcatcttgaatgttttcagtgaagatcta
catgccagcctgtattttgtcaatgcatctttgcaagaggtagtgtttgctagcaccaca
gggacactggtgccctgtcctgcagcagggatccctcctgtgacactcagatggtaccta
gcaacgggcgaggagatctatgatgtcccagggatccgccacgtccaccccaatggcact
ctccaaattttccccttccctccttcaagctttaataacttaatccatgataacacttac
tattgcacagctgaaaatccttcagggaaaatcagaagtcaggatgttcacattaaggcc
gttttacgggaaccctacacagttcgtgtggaggaccagaaagccatgagaggcaatgta
gcggtcttcaagtgcattatcccctcctctgtggaggcatacatcactgttgtctcttgg
gagaaagacacagtctcacttgtctcaggatctagatttctcatcacatccacgggagcc
ttgtatattgtagatgtacagaatgaagatggattgtataactaccgatgtatcacgcgg
cacagatacactggagaaacaagacaaagcaacagtgcaagactttttgtatcagaccca
gcaaactcagcaccatctattctggatgggtttgaccaacgtaaagccatggcaggacag
cgggtggagctgccttgcaaagcatcggggcacccagcaccaaagtaccgttggctgaag
gacaacgttccctgggagccagatagcaggtttcggcagacagtcacaggtctgctgata
gagaacacacgtccttcagactcaggcaactacgtttgtgaggtgtggaacaactatggt
actgctgaggtgatagggcatctgcatgtaaaacagcctctgaaagccacaatcagtcca
cggaaagttaaaagcagtgttggtagtcaagtgtccttgtcctgcagtgtgactggaact
gaggaccaagaactctcctggtaccgaaatggtgaaatcatcaaccctggaaacaacgtg
agaatcgtggggatcaaccgtgagaatctcattatggatggcatggccaaaagtgatggt
ggagcgtaccagtgctttgtacgcaaggacaagatgtctgctcaagactatgttcaggtg
gtgctagaagatggaactcccaaaatcatttctgccttcagtgagaaagtggtgagtcca
ggagagcctgtctcccttatgtgcaatgtgaaagggactcctctgcctacgatcacctgg
acactagatgaagatcccataatcaaagatggtaatcatcgtatcagccagattatcacc
tctgagggcaacgtggtcagctacctgaatatctctaacactcaagttcgagatggggga
gtctatcgctgtactgccaacaactctgctggagtcatcctgtaccaggctcgaataaac
gtaagagggccagcaagcatccgtccaatgaaaaatatcacagcaatagcaggacgggac
acctatatacattgccgtgtgattggctatccatattactcaattaaatggtacaagaac
tctgacctgcttccttttaaccatcgccaagtagcatttgaaaacaatggaacgttgaaa
ctctcagatgtgcagaaggaagtggatgagggggaatatacatgcaatgttctggttcaa
ccccagctgtctacaagccagagtgttcatgtgactgtaaaagttccacctttcatccag
ccttttgagtttccaaggttctccattggacagcgagtcttcgttccatgtgttgtggtc
tcaggggatttgccaatcacaatcacctggcagaaggatggcaggccaatcccagccagt
cttggagtaaccattgacaacattgacttcaccagctccttaaggatttttaatctttca
ctgatgcacaatgggaattatacctgtatagctagaaatgacgctgcagctgtggagcgc
caaagccaattaattgtgagagttccccctagatttgtggttcaaccaagtgatcaagat
gggatttatggtaaagctgtaatcctcaattgttctgcagagggttatcctgtacccacc
attgtctggaagtactcaaaaggtgctggggtcccccagttccagcccattgccttgaat
ggccgtatccagcttctcacaaatggttccttgttgattaagcatgtactggaggaagac
agtggatactacctctgcaaggtcagcaatgatgtgggagcggacgtcagcaagtccatg
tacctcactgttaaaattcctgctatgatcacttcctatccaaacaccactttggcaaca
cagggtcaaaagaaggagatgagctgcacagcacatggagagaaacccatcatagtccgc
tgggagaaagaggatcgaatcattaaccctgaaatgtcccgctatcttgtttccaccaag
gaagtgggtgatgaagtcatctctaccctgcagattttgccaactgtgcgtgaagattct
ggcttcttttcctgccacgctatcaattcttacggggaggaccgtggaataattcagctc
actgtgcaagagccaccagatcctcctgaaatagaaatccgagaggtgagagcacgtagc
attgccctcagatggaccatgggatttgatggaaatagcccaatcacaggctacgatatt
gaatgcaagaacaagtctgactcgtgggattctgttcagcgaaccaaagacgtctctcct
cagctgaaccaggccactatcattgacctccacccttcctccacctacaacatccgcatg
tatgccaaaaaccgcattggcaagagcgaagcaagcaatgagctcactgtcactacggat
gaagcagctcctgatggcccacctcaggaagttcagcttgagcctgtatcttcacaaagc
attcgggtcacttggaaagctccaaagaagcacttgcaaaatggaattattcgtggatac
cagataggctaccgagagtacagtgcagggggcaatttccagttcaacatcatcagtatt
gacaccactggagatagtgaagtttataccctggataacctgaaaaaattcacccagtat
ggcatggtagtacaggcatgtaaccgggctggaataggaccttcttctcaggaaatcatc
accactaccctagaggatgtgcccagttgcccaccagggaatgtccaagccactgctaca
tcaccagaaactatctccatttcctggtctacacttgccaaagaagccctgaatgggatt
ctacagggattcagagttatttactgggctaatctcttggatggagagctgggagagatt
aaaaatgtcactactacacagccctcactagagcttgatggcctggaaaaatacaccaac
tacagcatccaggttttggcattcacacgagctggagatggagtcaggagtgaacaaatt
ttcacccgcactaaagaggatgttccaggtcctcctgctggagttaaagcagctgcagca
tcaccatccactgtatttgtgtcctggctccccccatttaagttaaatggtgtcatccga
aagtacacagtgttctgctcacacccgtatcccacagtaatcagcgagttcgaagcctct
cctgactcattttcctacagaatccccaacttgagtcggcatcgacaatacagtgtctgg
gtggtggctgtcactgccgcaggaagaggcaacagcagtgaaattatcaccgtggagcca
ctggctaaagctccagccagaattctgacattcagtggcacagtaacaaccccatggatg
aaggatatcatccttccttgcaaagccgttggtgacccatctcctacagtcaaatggatg
aaggatagtaacgggacacccagtctagtgatgattgatgggcgaagaagcatctttagc
aatggcagctttgttatccgtactgtgaaagcagaggattctggatattacagctgtgtg
gccagtaacaactggggatcagatgaaattgttttgaatttgcaagtacaagtgccccca
gaccagccaagacttactgtgtccaaaaccacatcctcttctatcactctttcctggata
cctggagacaatggcggtagttctatccgaggttacatactgcagtactctgaagataat
agtgagcagtggggtagttttcccattagccctagtgaacggtcctaccgtttagagacc
ttgaaatgtggtacctggtacaagttcacactaactgctcagaatggagtgggaccagga
cgcatcagcgagatcatagaggccaaaacacttggaaaagagccacagttttccaaagaa
caagaactctttgccagtattaacaccactcgagtgcgattgaatcttattggctggaat
gatggcggttgtccaatcacctcctttactctggagtaccggccatttcggaccacagta
tggacaacagctcagcggacatcactttctaagtcctacatactgtatgacctccaggaa
gcaacttggtatgaactgcaaatgagagtgtgcaacagtgcaggctgtgcagagaaacag
gccaaatttgccacactcaactatgatggcagtacaatccctccactcattaaatcagtt
gtccaaagtgaggaaggtctggcaaccaacgaagggctaaagatgctggtgaccatttcc
tgtatcttggtgggggtcttgctgctttttgtgcttctgctgattgtacgaaggaggagg
agggagcagagactgaagagactcagagatgcaaagagtttggctgaaatgcttatgagt
aagaacaccaggacctcagatacacttaacaagcagcagcagacgctaaggatgcacata
gatattcccagagctcagcttctgattgaagagagggacacaatggagaccattgatgac
agatcaacagtgttattaactgatgctgattttggagagacatctaaacagaagtcattg
acagttactcatacagtacattaccagtctgtctcacaagctactggaccattggttgat
gtttctgatgcccggccaggaacaaatcctactacaagaaggaatgcaaaaactgggccc
acagctcgcaacaggtacgctagtcaatggactctcaacagaccccatcccactatatca
gcccacaccctcaccacagattggaggctgccaacacccagagctgcaggatcagtagac
aaggaaagtgacagctacagtgtcagcccctcacaggatacagatcgagcaagaagcagc
atggtctccacagaaagtgcctcctctacgtacgaagagctagcgagagcatatgaacat
gctaagatggaagagcagctgagacatgccaagttcacaattacagaatgctttatatca
gacacatcatcggaacagctaacggcagggactaatgagtacacagacagtctgacctca
agcacaccatcagaatcggggatctgcagatttactgcttcaccccccaaacctcaggac
ggagggcgcgtgatgaacatggcagttccaaaggcacatcggccaggtgacctcatgcat
ttgccaccgtatcttagaatggactttttgttgaatcgaggagtttcaggcactagcaga
gacctgggtttgggccaagcctgcttggaacctcagaaaagccgaaccctgaagcgtccc
actgttctggagccgatacctatggaaacatcctccacgagagaagtacagtcatggcaa
cctggtgccgtggcaacattacctcagcgagaaggggctgagctaggacaggcagctaaa
atgagcagctcccaagaatccctgctggactcccggggccacttgaaaggaaacaatccc
tacgcaaaatcttacaccctagtataa
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integrated database retrieval system
