Caretta caretta (Loggerhead turtle): 125643726
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Entry
125643726 CDS
T09292
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125643726 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccay04121
]
125643726 (SLX4)
03400 DNA repair and recombination proteins [BR:
ccay03400
]
125643726 (SLX4)
Ubiquitin system [BR:
ccay04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
125643726 (SLX4)
DNA repair and recombination proteins [BR:
ccay03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125643726 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
125643726
NCBI-ProteinID:
XP_048722765
LinkDB
All DBs
Position
10:52231935..52270745
Genome browser
AA seq
1873 aa
AA seq
DB search
MDELDDDFKELCANLLSRVRKKAGDAEGGRKVQSGTRSTATKSKLKKSKSAAKSKSQHDS
SVGKRVGLPGCTNPNEQALGHEPEGEATACGNDGPPLGDGNGDPPSAIQLYAMAPNCNQN
SLAGSGKRRSSFAAAAEPATSTSSPTKMHQISGTRLRVAELVLERMQQFKRVEPKQLKHT
LGSILPETVTDGNIPDVSQENHQPGNVTTPDLPAKEPDVALAVALQQELKEEVPGSLEEA
GLFFCQICQKDLSAMNATRREQHVNRCLDEMEKSQAPSSSNPQIPECPICGKQFHTPKSR
ASHLKRCAVKMEVPPQLLLQAVQSQALALSDGLPVAPSNQLGRSKRKGSSKEKESKKKQK
TSKVETTDEDLLVAMAMSRSLLEQIRQEEAKSVTSIKLESALPIKWKPGGEKKRRKNTPL
TPPPLLLQDPETAHKRIQNRMAMLLTEEVEFPSTPPLPASRILEEEPRKAAWLLSLPKEQ
RCILWEYSTLTGPCIPESFYAVGLTPPILPWKPVQQLQTSSNHPDPASLGLGNRTSDDPQ
ADPDGEQQFLSCSQKDVQTLENLVELAGEGLTLTQWNIDVDHTGAVKQLRGESVASDIPL
SGFVPPSKVKMCQSGSLHTSSLRSLAVDFSGMVNNPHLSDVQFQVDSGEVLYAHMFVLYA
RCPQLTEVVHGEGFLVEEDGNLQTRRVLLSEVTVEAARAFLQYLYAADTSIPAQVLSDVG
ALAIRFGVSELISICGNSPGEKEEHAGVDSGDELFSVGEEENCENRAENFQELLRSVWID
EDEEEVALLKPEDQEEEDNEKVDEQELEEIYEFVATQRKIVRDEAEVEEGTGRCTYSETE
EAQNVNRQTEDEEVVVCESPSTSSKIKEWKENFGLGRSSCESPGQEKKILGISRSENMSI
TRIAPVHLQGKPCECGDVSASHGGASDEREGCRRMPKVVKVSRFSQISQGEEEDDAWEKL
FPSCQHNDADLSKSYDPMFSATQGERCEPSPLNEANKESGEISSGTPVEVNNPPVHHQSQ
KDLLSVRSDLCSSPLINPSSPVLPAVGSSPMSPESNRTFSRVSTEISPVSAPKQKQNKGL
FQSDGASFQKASEQNDDSGLEKIIKNTLSPAKSPCIDLKKQKHVPTCSSLVLTTQNTASH
VNQEAEVILLLDSDEEMELEQMKEKSDSEPSLREMEISRRLDCNCKKVEQEHEVLNSGPV
SVADIAIHQRPFQVSLGSQDRVHSENAVKLSGKMSLNNQVGTCIDSRLNLSHEESSNMDT
SWLVPDTPLLTRSRNCSTQTQATSLSCFRSQGSKHRTKALLVNNSDHKQAGEAMKIPEIT
SDLLLATSSQKHLLTEYSSVSKKTSPGSPSGHFWKDSLLVSPAPLSPACVRVKEKSSENL
SSPKQGLPCRELSLENKTDISVVEVEDSEEEKEVALLHSSGSFLLGDEPPIPVDDDCWSV
EHLSPIKDNNKVLERVDWANTSSLIRGESGFQHDQWKSPTRALEITGSTPLRGNPVGNRK
TLLCHKESPIEAHSSVSNRLCFLNSKVWDEWDEDEVPEILSLTQRVSAAAAAQNTQPLKT
PDPACHKRNQPPRVPITPVPAYSIMETPELKKELNRFGVRPLPKRQMVLKLKEIFQYTHQ
IMSSDSEDEIPSSQPPLRKATAKHPSQPQPDLIELREENSKASSVGCEQKLGVSVPSLPV
LGSGDADSSTGPSTTGYLRTKKTAETKGHPGGARGLKGATLSPATSPVKGSLVGSADGQV
LSASQESAAASAAGSDNSFGSQSSSSNEFETGVLTSEEDEEFPASQAAAREADKLEAVRR
YIHSNPGLYQKILLYQPFELTGLQAELKQNGIKIALGKLLDFLDAHCITFTTAGARKEKQ
QQRGGKKKGCKRY
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctggacgatgattttaaagaactctgtgctaacctattgagcagggtcagg
aaaaaggctggagatgccgagggagggaggaaggttcagagcgggacaaggagcactgca
acaaaaagcaaattaaaaaagagcaagtcagctgctaagagcaaaagccagcatgactcc
tctgttggaaagagagtgggcttgccagggtgcacgaaccccaatgagcaggcattgggg
catgaaccagaaggtgaagctacagcctgtggaaatgatgggcctccactgggagatgga
aatggagatcctccttctgccattcagttgtatgctatggcaccaaactgtaaccagaac
agcctggcaggcagtggcaagcgcagatcatcctttgctgctgctgcagaaccagcaacc
tccacctcatcccctacaaagatgcaccagatctcaggaaccaggctgcgggtagcagag
ctggtgctggagaggatgcagcagtttaagagagtggaaccaaaacaactgaaacacacc
ctgggcagcatcttgccagagacagtaacagatggaaacatccctgatgtgagccaggag
aaccaccagccaggaaatgtgaccactccggatctgcctgcgaaggagccagatgttgcc
ctggcagtggccctccagcaggagctcaaagaagaagtacctggaagtctggaagaggca
ggcttatttttttgtcagatctgtcagaaggacctctcagccatgaatgcaacacgacgg
gagcagcatgttaacaggtgtctggatgagatggagaagtcacaggcgccctcttccagc
aacccacagatccctgagtgccccatctgtgggaagcagttccatacacccaaaagccga
gccagtcacttgaaacgctgtgctgtcaagatggaggtccctccgcagttgcttctccag
gcagtgcaatcgcaggcattggccctgagtgatgggctccctgtagcacccagcaatcag
ctaggtaggtcaaagcgaaaaggctcctccaaagagaaggagtcaaagaaaaagcagaag
acatccaaggtggagaccaccgatgaggatcttctggttgccatggcaatgtcacgatct
ctgctggagcaaataaggcaggaggaagcaaaatcggtcacaagcattaaactggagagt
gctttgccgatcaagtggaagcctggaggagagaaaaaaaggcgtaagaacacccccctc
acacctcctccattgttacttcaagatccagagacagcccataaacggatccaaaaccgg
atggccatgctattaacagaggaggtggagttcccgagcacccctccgctccctgccagc
aggattttggaggaggagcctaggaaggcagcctggcttctatctttgcccaaagaacag
cgttgcattttgtgggagtatagtactttgacgggaccctgtatcccagagtccttctat
gcagtgggattaacccctcctattttaccttggaaacctgtacagcagttacagaccagc
agcaatcatcctgatcctgcttctttggggcttggaaacagaacttctgatgatccccag
gcagaccctgatggagagcagcagtttctgtcttgcagccagaaggatgttcagactctg
gagaacctggtggagctggctggggaaggacttactctcacgcagtggaacattgacgtt
gaccacaccggggcagtgaagcaactgagaggagaatcagtggccagcgacattccactt
agtggctttgtccctccatccaaggtgaaaatgtgccagagcggcagccttcacacatcc
tcactcaggtcgctggctgtcgatttcagtggaatggtcaacaacccccatctaagtgat
gtccagttccaggtagacagtggggaagtcctttatgcccatatgtttgtgctttatgca
cggtgcccacagctgactgaagtcgttcacggtgaaggtttcttagtggaagaggatggg
aatttgcagacccgtcgagtgctgctgagtgaagtgacggtcgaggcagcccgtgcattt
ctgcagtacctttatgcagctgataccagtatccctgcccaggtgctctctgatgtggga
gctcttgccatcaggtttggtgtgagtgaactgatctctatatgtggaaacagccctggg
gagaaggaggagcatgctggagtagactcaggagatgaacttttctccgtgggggaagaa
gagaattgtgagaacagagctgagaacttccaggagctcttgaggtcagtgtggatagat
gaagatgaggaagaagtagctttgctgaaacctgaagaccaggaagaggaagacaatgag
aaagtggatgagcaggaactggaggaaatttatgagtttgttgccactcagcgaaagatt
gttcgagatgaagcagaggtggaggaaggcacaggcagatgcacttacagtgaaacagag
gaggcccaaaatgtgaaccgacagactgaggatgaagaggtggtggtgtgtgaatctccc
tcaacaagcagcaagattaaagaatggaaggaaaattttggcctgggaagatccagctgt
gaatcacctgggcaagaaaagaaaatcctaggtataagtaggagtgagaacatgagcatt
acacgaattgcgcctgtgcacttgcagggtaagccttgtgagtgtggtgacgtttcggct
tcccatggtggagcctctgatgaaagagagggctgtcggagaatgcccaaagtagtgaag
gtttctagattctctcagatttcacaaggtgaagaagaggatgatgcctgggaaaaactg
ttccctagttgccaacacaatgatgctgacctcagtaaaagttatgatcccatgttttcc
gcaacccaaggggaacgttgtgagccttctccactaaatgaagccaacaaagagtcagga
gagatttccagtggaacacctgttgaggttaataatccacctgttcaccatcagtcacag
aaagacctcctgtcagttaggagtgatttgtgtagcagtcctcttatcaacccttcctca
ccagtgttgccagctgttggttcatcacctatgtctccagaatcaaataggacattttcc
agagtatccacagaaatttctcctgtatcagcaccaaagcaaaagcaaaataaaggactc
tttcagtctgatggtgcatccttccaaaaagccagcgaacagaatgatgattcaggactt
gagaagatcataaagaacacactttctccagcaaagtctccctgcattgatttaaaaaag
caaaaacatgtcccaacttgctcatcgttggtcctcacaactcagaatactgcttctcat
gtgaaccaagaggctgaagttattcttttgctggattctgatgaagaaatggagttagaa
caaatgaaggagaaatcagattctgaaccttccctgagggaaatggaaatctccaggcga
ttggattgtaactgtaagaaagtggagcaagagcacgaggtactaaactctggacctgtt
tcagttgctgacattgcaatacaccagagaccatttcaagtgtcactaggaagtcaagac
agggtgcacagtgagaatgctgtaaagctgtcaggaaagatgtctcttaacaaccaggtt
gggacctgtattgatagcagactgaatttgagccatgaggagagctctaacatggacacc
tcatggttggtgccagacacacctcttcttaccagaagcaggaactgctcaacacagacc
caggcaacaagtttgagttgtttcaggagtcaagggtctaagcacaggactaaagcttta
ttggtaaataatagtgaccataaacaagctggggaagctatgaagattccagagataact
tcagatctgttacttgcaacttcctcacaaaaacatttgcttacagagtactcctcagtc
agcaaaaaaacctctcctggaagcccttcaggtcacttttggaaggattctctgcttgtt
tctccagctccactctcacctgcctgtgttcgtgtgaaagagaagtcttcagaaaacctg
tcttcacccaaacaaggccttccatgccgtgagctgtctttggagaataaaacagacatt
agtgtggttgaggtagaggacagtgaggaggaaaaggaggtggctctgctccattcgagt
ggcagcttcctgcttggtgatgagccaccaattccagttgatgacgactgctggagtgtc
gaacatctgtcaccaatcaaagataacaacaaggtgcttgagagggtggactgggcaaat
accagcagtctcatccgtggagaaagtggctttcagcacgaccaatggaagagtccaacc
agagccctggaaattacaggtagcactcctcttcgaggaaatcctgttggtaatagaaag
accttgctctgtcataaagagagtcctattgaggcacattcttcagtgagcaataggcta
tgttttttgaactcgaaagtctgggatgaatgggatgaagatgaagtccccgagattctt
tctctcacacagagggtgtcagctgcagcagctgcccagaatacccagcccctaaagact
cctgacccggcctgtcacaagagaaaccagccccccagagttcccataacaccagtacca
gcttactccatcatggagaccccagagctgaagaaggaactaaacagatttggagtccgt
cctctcccaaaacggcagatggtgttaaagttgaaggagatattccagtatactcatcag
atcatgtcctctgactcggaggatgagatcccatcctcccaaccacccttacggaaagcc
actgccaagcatcccagccaaccgcaaccggacttgattgaactgagagaagagaattcc
aaggcctccagtgtagggtgcgagcagaagctgggggtttcggtcccttccctgccagtt
ctgggcagtggtgatgctgacagctcaacgggcccctctacaacaggctatctgaggact
aagaaaacagctgaaactaaaggccacccaggaggagccagagggctaaagggagctact
ttatctccagctacatctccagttaaaggttctctggtgggcagtgctgatggacaggtg
ctctcagcatctcaggagtctgcagctgcttcagcagctggaagtgacaactcctttggg
tcacagagttcttcttccaatgagtttgagacaggtgtgcttacatctgaagaggacgag
gagttcccggcatctcaggctgcagcccgagaggcagataagctggaggcagtgagacgc
tacatccattcaaaccccggcctgtaccagaagatcctcctttaccagccctttgagctg
actgggctgcaggcagagctgaagcagaatggcattaagattgcgctgggaaaactgctg
gactttttggacgctcactgtatcacctttaccacggctggggcacggaaagagaagcag
caacaacgcgggggcaagaaaaagggatgcaaacgatactga
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integrated database retrieval system
