Caretta caretta (Loggerhead turtle): 125644051
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Entry
125644051 CDS
T09292
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ccay01001
]
125644051 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ccay04054
]
125644051 (CIITA)
Enzymes [BR:
ccay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
125644051 (CIITA)
Protein kinases [BR:
ccay01001
]
Serine/threonine kinases: Other
TAF1 family
125644051 (CIITA)
Pattern recognition receptors [BR:
ccay04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125644051 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_4
LRR_6
LRR_14
NB-ARC
LRR_9
nSTAND3
LRR_8
AAA_16
NPHP3_N
RsgA_GTPase
AAA_19
AAA_22
DUF87
Motif
Other DBs
NCBI-GeneID:
125644051
NCBI-ProteinID:
XP_048723398
LinkDB
All DBs
Position
10:61687814..61748223
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AA seq
1175 aa
AA seq
DB search
MDSAVLTENSFLDLLHSNIDPLHLYSLLDTRLSDEDEESELSTDPEIDTINHDQFSNLDV
FYTMESNGSVEESLFSNTGEAYSRIAGLAEYVLKDQQERQMEDIFGKLILDEMSNETTEG
FTEMKKQKCQKRPFVSTAESYSDASKLKCRRTDAAKRVKEGVCTEGSRAVVDVRTSCQKR
VESPGSTVNGTFVAVPLNSSPANSTSLSHLHMQFSVTSIHPTGKNVVMPVSSGNSNPDCL
LVGAKGIQVISGFAVHPQQIINLPVGNGESNIIIYPVSSSPTETLQISPVYPTTLAAQVD
LAVQSILGSPDKNPSMGPFAYMPETAAVTDHTDEEEMSNERSQIPVVPSEQILKRPKPVD
AFCTSLKDYFQDVCKFMAMDREVTLDHLYIDGALMQGQTETKSGKNIIKVMEKELVIYNL
EEKEKAAIERSQIFQVLGGKELETKVVVVLGKAGMGKSILVQKICQDWSNGKFSQFEFVF
WFECRRLSLPEKQYSLKDLLLELFVKPREGSNEVFEYILQNPDKVLLIFDGFEELQDHDG
FTHYSDCQSYKELYSIRELFAGLFQKKILSGCTLLLTARPKDKFNQYLSKVDKIIEMIGF
SPQQVESYIARYFEGLPYSDDAVKLITDCQYLFSHCYSPVMCRFICFLCEMMFEMGDKDL
PSTLTSLFVKYLQQKLIPTQTDVTAIGNQQHITRLAQLAWYLGEKNQNALKSSLFPSKEV
KEFALKYGLVLPFTFPKHSGNREEEFGSVFSDFVIQNFLSALHLVLTEEIKDKSLTKYLS
LPARKKKPHNWLDLVPRFLPGLLYLQHDPYLCSLSDEHVMKIITKKQKTLLKYIKKIQIS
DLYPEKLLELLHCVYETQDSYLLQHVALRLKAELSFLGTLLTPPDVYVLHFILKRSPKEF
SLDLRNSGINLQGLKHLVGLKSVTSFRASLSDTVRLWESLEQTKEYELLKISVEKFGIDP
FKAETMKDISDLSDLVRVQEKMIRCMEDAFGCNINEIPAIKNLRKLEFALGAACGLQGFL
KLVEILAAFPSLQHLDLDALSENEIGDEGTKSLCEVLSELTSLETLNLSQNKITDLGAEQ
LATALPSLSSLKTLSLYNNYICDAGAENIARILPAMASLRVLHVQCNKITDAGAQKLTDS
LRKCPHIKSVAMWNPTIPYGVLEHLQQLDSRISLL
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggattcggcagttttgactgaaaatagctttcttgatttgctgcacagcaatattgat
ccactgcatctatacagcctcttggacacaaggttatctgatgaagatgaagaaagtgaa
ctttcaacagaccctgaaattgataccatcaaccatgatcagttcagcaatttggatgtc
ttttatacaatggaaagcaatggaagtgtggaagaatctctcttttcaaatacaggggaa
gcttattctagaatagctggattagcagaatatgtgctcaaagatcagcaggagagacag
atggaagacatttttggaaaactcattttggatgaaatgtccaatgaaaccacagagggt
tttacagagatgaagaagcagaaatgtcagaaacgaccattcgtgagcactgcagagagt
tactctgatgcttccaagctcaaatgcaggagaacggatgcagcaaagagggtgaaggaa
ggagtatgtacagaaggcagcagagctgttgtggatgtaagaactagttgccagaaaaga
gtggagtcccctgggtctacagtgaatggaacttttgtagcggtgcctctgaacagctct
ccagctaactccacctctttgtctcacctgcacatgcagttttctgttaccagtatacat
ccaactggaaaaaatgttgtgatgcccgtgtcttctggaaattccaacccagactgtctg
cttgttggtgctaaagggatccaggtgatatccggctttgcagttcatcctcagcagata
attaatttgcctgtagggaatggtgaatccaatattataatatatccagtgtcctcctcc
cccactgaaacattacagatatcaccagtttaccccacaaccctggctgctcaagtggac
ttggctgtccaaagcattttggggtctcctgacaaaaacccctccatgggcccatttgct
tatatgccagagactgcagctgtgactgatcatacagatgaagaagaaatgtccaatgag
agatcacagattcctgttgttccttctgaacaaattctcaaaagaccaaagccagtggac
gctttctgcacatcacttaaggattatttccaagatgtgtgcaagttcatggccatggac
cgtgaagtaacccttgatcacctttacattgatggggctctcatgcaaggtcaaactgaa
acaaagagtgggaaaaatatcatcaaggtgatggagaaggagctggtaatatacaattta
gaagagaaggaaaaagcagctatagaaagaagccaaatatttcaagtcctgggagggaaa
gaactagagacgaaagtcgttgtggtgttgggaaaggcaggaatgggtaaaagcattctt
gttcaaaagatctgccaagactggtccaatggaaagttttctcagtttgaatttgtcttt
tggtttgagtgtagacggctgagcctgcctgaaaagcaatacagcttgaaggacctgctt
cttgagctctttgtcaaacctcgagagggaagcaacgaagtcttcgagtacatactgcaa
aatcccgataaagtcctcctcatcttcgatggtttcgaagagttgcaggatcatgatggc
tttacacattactcagactgccagtcgtacaaggagctgtacagcatcagagagctattt
gcagggctcttccagaagaagatactcagtggctgtactttattgctaacagcaagaccc
aaagacaaatttaatcagtatttatccaaagtggacaagattatcgaaatgatagggttc
tctccacaacaggtagaatcatatatagccagatattttgaagggctaccatacagtgat
gatgcagtgaaattaatcacagattgtcaatatctgttcagtcactgctacagccctgtc
atgtgtagattcatttgttttctctgcgaaatgatgtttgaaatgggagacaaagacctg
ccttcaacacttaccagcctctttgtaaaataccttcagcaaaagctgatacctacacaa
acagatgtgacagccataggaaatcaacagcacattaccaggctagctcagttagcctgg
tatcttggagaaaagaatcaaaatgccctgaagagcagtctttttccctctaaagaagtt
aaggagtttgctctgaaatatggcttagtactgccatttacattcccaaaacattcggga
aacagggaggaagaatttgggagtgtgttctcagattttgttatccaaaattttttgagt
gcacttcatctggtgctcacagaagagatcaaggataaaagcctcacaaagtacctctca
ctaccagccaggaagaaaaagcctcataattggttagacttggtgcctcgattcttgcct
gggttattgtatctccagcatgatccatacctctgttctctttcagatgagcatgtaatg
aaaatcataaccaagaagcagaagacactcttaaaatatattaaaaaaatacagataagt
gatctctatccagaaaaactacttgagctgctccactgtgtttatgaaacacaggacagc
tatcttttgcagcatgtggctttaaggctcaaggctgaactttcttttctgggcactctt
cttacaccccctgatgtctatgtgctgcattttattttaaaaagatccccaaaggagttt
tccttggatttgaggaacagtggcattaacctacaagggctgaaacacctggttggccta
aagagtgtgacatcatttagggcctcccttagtgatacagtcaggctgtgggagtcctta
gagcaaacaaaggaatatgagctgctgaagatttcagttgagaaatttggtattgatccc
tttaaggcagaaactatgaaggacatcagtgacctgtctgaccttgtacgggtacaagag
aaaatgatccgctgcatggaagatgcatttggctgcaatattaatgaaattcctgctatc
aaaaacctcagaaaactagaatttgcgctgggtgcagcctgcggccttcagggattctta
aagcttgttgaaattcttgcagcattcccatctcttcagcatttagacttggatgcgctg
agtgaaaatgaaataggagatgaaggaacaaaaagcctctgtgaagtattgtctgagctg
acatcactggaaacattgaatttatcacagaacaagataacagatttgggggcagagcaa
ctagccactgctcttccttccttatcctcgttaaagacactgagtttgtacaataactac
atttgtgatgctggagcggaaaatattgcaagaatacttcctgcaatggcatctttaagg
gtgttacatgttcagtgtaacaagataactgatgccggagcccagaagctgactgatagc
ctcagaaaatgcccccacatcaagagtgtggcgatgtggaatcctactattccctatgga
gttcttgagcatcttcaacagctagattctagaatcagtttgctgtag
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integrated database retrieval system
