Caretta caretta (Loggerhead turtle): 125644297
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Entry
125644297 CDS
T09292
Symbol
IFT140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
KO
K19672
intraflagellar transport protein 140
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ccay03037
]
125644297 (IFT140)
Cilium and associated proteins [BR:
ccay03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
125644297 (IFT140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_EML_2
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_HPS5
Beta-prop_WDR19_1st
WDR55
Beta-prop_WDR90_POC16_2nd
TPR_IFT80_172
TPR_GEMI5
Beta-prop_WDR75_1st
TPR_COPA_B
Clathrin
WD40_MABP1-WDR62_1st
RNase_HII
Beta-prop_WDR35_TULP_N
TPR_2
Motif
Other DBs
NCBI-GeneID:
125644297
NCBI-ProteinID:
XP_048723967
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Position
10:47080306..47326552
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AA seq
1460 aa
AA seq
DB search
MALYVGHRIEVPDSVGSPSHITWHPVHPLLAVASISSTSGGSVDIYLEQGEHVPDSHTER
SFRATSLSWHPSRLILAVGWETGEVVVLNKQDKEHHTVPPNHNAEITVLNWSTNGTRLVS
GDRLGVMVLWRVDQRGRVQGLPLLKHEYGKYLSHCIFWPSPPGEDLVQLAKAAVSGDEKA
LDMFNWRKAGIGVPLKVGPQEGLSFFISVADGSVHYVNEKGKTSHALSTDSPIQKLLIME
KRDVLVVITENLLLSMYTITLEGEAEEIMKVKLSGKIDHSADIILIDRSLLVTAIGETVL
RFWDLERSENYVLFLDVQLGFEVGECLNSVSYCTVKGLLAAGTNKGRIAMWRKASVSNQS
TWVLEGKDRWKLQTPTELEGNITQIKWGSRKNLLAVNNMSSVVILSEQAMSSHFHQQVAV
VQVSPNLLNVTFFGTGTTHSLRIDMHINGVFATKDAVVFWNGKQVTVFECSGATLRNAGS
FLCDSPVLAMHEESIYTVEPNRVQVRTWQGTVKQLLIFSEAEGNPCLLDVCGNFLAVGTD
LAHFKIFDLSRREAKVHCSSKNLTELFPGLGGIASVKCNSYGNKVSILVNKADESLDSKI
CFYDVEMDTVKFFDFKAGQGDGGAVPSYSGQKPEKSVTEHPALQDRIPVSHFWDHSEPRL
FVCEAVREPNLQFPDKQQQQTESSESTPDVLIISFFSTEEHGLLLQDSFPLPSTYQALLG
IEVPYYYFAKKPGEAEKEAQVESGSVQLPQMVAKRPMRDFIGLEECDKTTREAMLNFSFY
LTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGAKALREAEQE
PEVEARLAMLAIQLGMLEDAERLYKNCKRYDLLNKFYQASDQWQKAMEVAETHDRVHLRT
TYYNYAKHMEATAECNIALSYYEKSDTHRFEVPRMLSEDLQALEIYVNKMKDKNLWKWWA
QYLESQSDMESALRYYELAQDYFSLVRVYCFQGNIQKAAEIANETGNWAASYHLARQYES
QDEIKQAVHFYTRAQAFNNAIRLCKENNLDDQLMNLALLSSPEDMIEAACYYEEKGEQMD
RAVMLYHKAGHFSKALELAFATQQFGALQLIAEDLDEKSDPALLARCSDFFIEHAQHEKA
VELLLAAKKYHEALQLCLNQNLTITEEMAEKMTVSKDSKELSEESRKELLEQIADCCMRQ
GNYHMATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSKQREIYIMAANYLQSLDWRKD
PEIMKNIISFYTKGKALDLLAGFYDACAQVEIDEYQNYEKAQGALTEAFKCLSKAKTRSP
VEQESKLALLQSKMALVKRFIQARRVYSEDPKEAIRQCELLLDEPDLDSTIRLGDVLGFL
VEHYLQVEDFQMAYRYLEEMRKRIPCVNLTYYVNERTIEAVHRGLGIPWNRNPVPERIRH
NSIEDNKEVEEDVADEVEDP
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggctttgtatgttggtcacagaatagaagtccctgattcagttgggtccccttcccac
ataacttggcaccctgttcatccactcctggctgttgcttccattagctcaacatctgga
ggcagtgtggatatctatttggaacagggagagcatgtgcctgattcacacactgaaagg
agttttcgggccacatctcttagctggcacccatccagactgatcctggcagtgggctgg
gagacaggggaagtggtggtgcttaacaaacaggacaaagagcaccacacagtacccccc
aaccataatgccgaaattactgtcctaaactggagtactaatggtacccgccttgtgtct
ggtgataggcttggagtcatggttctatggagagtggaccagcggggtcgagtgcagggc
ctccctttattgaaacatgagtatggaaagtatctttctcactgtatcttttggccttca
cctcctggcgaggacctggtacagctagccaaagcagcggtgagtggtgatgagaaagcc
ctggatatgtttaactggagaaaagctggaatcggagtgcctctgaaagtgggaccccag
gaggggttgtccttcttcatcagtgtggcagatgggtctgtgcattacgtgaatgaaaaa
ggaaagacaagccatgcattgagcacagacagtccaatccaaaagctcctgatcatggag
aagagggatgttttggtggtaataacagagaacctcctgttgtctatgtacacaataact
cttgagggagaagcagaggaaatcatgaaggtgaagttgagtggaaagatagatcactct
gcagacattattttaatcgaccgtagcctccttgttacagcaataggtgaaacagtcctc
aggttctgggatttagagcggagtgagaattatgtgctctttctagatgtgcagcttggc
tttgaagtaggggaatgtttaaactctgtctcttactgcactgttaaaggtctcctagca
gctggtaccaataaagggagaatagctatgtggaggaaagcatcagtgtccaatcagagc
acatgggtgttggagggaaaggacagatggaagcttcagacccctacagagctggagggg
aatatcactcagataaagtggggctccaggaaaaacctactggcagtgaacaacatgagc
tctgtggtgatcctcagcgagcaggctatgtcatctcatttccaccagcaggtggcagta
gtgcaagtgtccccaaatctgcttaatgtgaccttcttcggtacaggaaccacgcacagc
ctccgcattgatatgcatattaatggagtatttgccactaaggatgctgtagtgttctgg
aatgggaagcaagtcactgtctttgaatgctcaggagccactttacgaaatgcaggctct
ttcctctgtgattctccagtgctggctatgcatgaagaaagcatttacacagttgagcca
aatcgagttcaggtccgcacctggcagggtactgtcaaacagttgctgatattctctgaa
gcagaggggaatccctgcctgttggatgtctgcgggaatttcctggctgtgggaacggac
ttggctcactttaaaatctttgatctctctcgcagagaggcaaaagtgcactgcagtagt
aagaacttgactgagctttttcctggcctggggggcattgcatcggttaagtgcaattct
tatggcaacaaagtcagcatcctcgtcaacaaggctgatgagagtcttgactctaagatc
tgtttctatgatgttgaaatggacacagtcaaattctttgatttcaaggctggacaaggg
gatggtggagccgtgccttcctactctggacaaaagcctgaaaagagtgttactgagcat
ccagcactgcaagatcgcatccctgttagccacttctgggaccatagtgaaccaagactt
tttgtatgtgaagcagtccgtgaaccaaacctgcagtttccagacaagcagcagcagcag
acagagagctcagaaagcacgccggatgttttgattatatcattcttcagtactgaagag
catggtcttttgcttcaggacagcttcccattgccttcaacctaccaggctcttctgggc
atcgaggttccatattattactttgcaaaaaagccaggagaagctgagaaagaagcacaa
gtggaatctggctcagtacaactccctcaaatggttgccaaaaggcccatgagagatttc
attggtctggaagagtgtgacaaaactacccgagaagctatgctgaacttcagcttctat
ctaacaattggggacatggatgaggccttcaaatccatcaaactcatcaaaagtgaggca
gtctgggagaatatggcccgcatgtgcgtgaagactcagaggctggatgttgccaaagtt
tgcctcggaaacatgggtcatgccagaggagctaaggcattaagggaggcggaacaagaa
ccagaggtggaagccagattggccatgttggcgattcagctgggcatgctggaagatgca
gagcggctgtacaagaattgcaagcgctacgacctcctgaacaagttctaccaggcttct
gaccagtggcagaaagctatggaagtagctgagactcatgaccgggttcacctgcgcacc
acatactacaactatgccaaacacatggaggccactgcagagtgcaatattgcacttagc
tactatgagaaatcagacacgcataggtttgaggtgcccaggatgctctctgaagattta
caagccttggagatctatgtcaacaagatgaaagataagaacttatggaaatggtgggca
cagtatctggaaagccagtcagatatggaatccgcactaagatactatgagttagctcag
gattatttctccctggtccgtgtttattgctttcagggcaacatccagaaggctgctgaa
atagcgaatgaaacaggaaactgggcagcatcctatcacctggcccgccagtacgagagc
caggatgaaatcaagcaggctgtgcacttctacactagggcccaggcatttaacaatgcc
attcgcttgtgtaaggagaacaatctggatgaccagctgatgaacctggctctgctgagt
tccccagaagacatgatagaggcagcctgctattatgaagagaagggggaacaaatggac
agagcagtcatgttgtaccacaaggcaggacacttttccaaagcgctagagctggctttt
gccacacagcagtttggtgccctgcagctgattgctgaggacctggatgagaagtcagac
ccagctctgctggcacgctgctctgacttcttcattgaacatgcccagcacgagaaggct
gtggagttgctgctagcagccaaaaagtaccatgaagccctgcagctttgcttgaatcag
aacctgaccatcacagaggagatggccgagaagatgactgtctccaaggattcaaaggag
ctctctgaagagtctaggaaagaactgctggaacagattgctgattgctgcatgcggcaa
ggcaattaccacatggcaaccaagaaatacactcaagcaggaaacaagctgaaggcaatg
agagcactgcttaagtctggagacacagagaaaatagtgttttttgctggagtctccaaa
cagagggagatttatatcatggcagccaactacctacaatcactggattggcgaaaggac
ccagagattatgaagaacatcattagcttctataccaagggaaaggcccttgacctctta
gctggcttttatgatgcctgtgctcaggtggagatcgacgaataccagaactatgagaaa
gcacagggagcactgactgaggcattcaagtgcctgtcaaaggcgaagacgagaagccct
gtagagcaggagagcaaactggcactcttacaaagcaagatggctttggtcaagcgattc
atccaggctcgaagagtttactctgaggaccccaaagaggcaatcaggcagtgtgagctt
ctcctcgacgagccagaccttgacagtaccatccgcctaggcgatgtcttgggctttctg
gttgaacattacttacaggtggaggacttccagatggcctacagatacttggaggagatg
cggaaaagaattccatgcgtaaacctgacctactatgtgaatgaacggaccattgaggca
gttcacagagggctgggcattccctggaaccggaaccctgtcccagaacgaattcgccac
aacagtattgaagacaacaaggaggtggaagaggatgtagctgatgaagtcgaggatccc
tga
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integrated database retrieval system
