Caretta caretta (Loggerhead turtle): 125644479
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Entry
125644479 CDS
T09292
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125644479 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125644479 (PRPF40A)
Spliceosome [BR:
ccay03041
]
Complex A
U1 snRNP components
U1 related factors
125644479 (PRPF40A)
Complex B
125644479 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
125644479
NCBI-ProteinID:
XP_048724392
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All DBs
Position
11:47581466..47628202
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AA seq
1058 aa
AA seq
DB search
MSGGDSAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVASATDQSPKSSRLGGRPDWPGG
KPVSLLAPLLPPRGEPEPLMPFGPSSRQQLRGRLLGRCGGGSLLNPSMRPGGVDRGSLMM
GHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSMMPGMMMS
HMSQAHMQPTVPPGVNSMDTQVGTTPPGTQITHQIVCAAQQTTATNSSINEDPSKQKSMW
TEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKE
SRWAKPKELEDLEAMIKAEENSSKPEESTPTSSAPAVATEITDTTSVTAATAPAAATTTT
SDVETAVAAPAATAIPAVAAAPETESSTVAAVVENESTVTTTAEEQVQQTTTAAAATTIA
TPVVQEQNVEAVTNTAEETSKQEASVDVAPKKEEEDTQPVKKTYTWNTKEEAKQAFKELL
KEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAK
ESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAK
QLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEH
IRALEKEEEEEKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDI
RFTNMLGQPGKTTSSSNNVESDTVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKEV
TLLQDKGFLVEVNTTFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEA
RKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFIHVL
EHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESRSVSDRSSSA
ESERSYKKSKKHKKKNKKRRHKSDSPESDTEREKDKKEKERENEKDRPRQRSESKHKSPP
KKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggggactcggcggctgccgcggcctcccctcagccgctccccttctccttg
ccgaagccccctcccctcatgcagctgacgccgggggacgccgtccgccccgttgcctcc
gctacggaccaatcgccgaagagttcccggttgggaggccgcccggattggccgggtggg
aagcctgtcagcctcctggccccactgctcccgccccgcggggagcctgagcctctgatg
ccctttggcccctcgtcgcggcagcaacttagagggaggcttcttggcaggtgtggcggg
gggagcctcctgaacccctcgatgaggccgggcggagtggatagaggatccctcatgatg
gggcatccaggcatgccgcattatccacctatgggaatgcacccgatgggccagaggcca
ccgaacatgccaccggttccacatggaatgatgcctcagatgatgcctccaatgggagga
ccaccaatggggcagatgcctggaatgatgcagtcaatgatgcctggaatgatgatgtct
catatgtcccaagcacatatgcagcctactgtaccgccaggagtaaacagtatggacaca
caagtaggcactacaccacctggaacacagatcacacatcaaatagtttgcgcagcccag
caaactaccgcaaccaacagttctataaatgaagatccttctaaacagaaatctatgtgg
actgaacataaatcaccagatggaagaacttattattataatactgaaacaaaacaatct
acatgggagaagccagatgatctcaaaacacctgctgagcaattgttatctaaatgccct
tggaaagagtacaaatctgactctggaaagccttattactacaattcccaaacaaaagaa
tcacgttgggcaaaacccaaagagcttgaagatcttgaagcgatgattaaagctgaagaa
aacagcagtaaaccagaagaatcaactccaacatcttctgctcccgctgttgcaacagaa
attacagataccaccagtgtcaccgccgccaccgcccccgccgccgccaccaccaccact
agtgatgttgaaactgccgtggctgctcctgcagccactgccattcctgctgtagcagct
gctcctgaaactgaatcttctacagtagctgctgttgtagaaaatgaaagtacagtaact
acaacagctgaggaacaagtgcagcaaactactaccgccgccgccgccacaaccatcgcc
acccctgttgtacaagagcagaatgtagaagctgtcactaacactgcagaggaaacttct
aaacaggaggcttcagtggatgttgctcccaaaaaagaggaagaggacacccagccagtt
aaaaaaacatatacatggaatacgaaagaagaagcaaagcaagcatttaaagaactgttg
aaagaaaagcgtgtaccatccaatgcctcgtgggagcaagctatgaaaatgatcattaat
gatcctagatacagtgcattggcaaagttgagtgaaaaaaagcaagcctttaatgcttac
aaagtccagacagagaaagaagaaaaagaagaagcaagatcaaaatacaaagaagctaaa
gaatcctttcaacgtttccttgaaaaccatgaaaagatgacatctacaacgagatacaaa
aaagctgaacaaatgtttggtgaaatggaggtctggaatgcaatatcagagcgtgatcgt
cttgaaatttatgaagatgtcttgttctttctgtctaaaaaagaaaaggagcaagccaag
cagttacgaaagaggaattgggaggctttgaaaaacattttggacaacatggctaatgta
acatactctaccacttggtcggaggcccagcagtatctgatggacaatcctacatttgca
gaggatgaagaacttcagaatatggataaagaagatgcactgatttgttttgaagaacac
atcagagctttggaaaaagaagaggaagaagaaaaacaaaagagtttgcttagggaaagg
cgacgacaacgtaaaaatagagaatcttttcagttatttttggatgaattacatgaacat
gggcagttacattcaatgtcctcctggatggagttgtatccaaccataagttctgacatc
agatttactaacatgcttggtcagcctggtaagactacttcctcttccaacaatgtagaa
agtgatacagttttttcattaggatcaactgcacttgatcttttcaagttttatgttgaa
gatttgaaagcacgttaccatgatgaaaagaagataataaaagacatcttaaaggaggta
actctcttgcaggataaaggatttctggttgaagtgaatactacttttgaagacttcgtt
acagtcatcagttcaactaaaagagcaaccactttagatgctggaaatatcaaactggct
ttcaacagtttgctggaaaaggcagaagcccgtgaacgtgagcgggagaaagaagaggct
cgcaaaatgaagcggaaagagtctgcattcaagagcatgttaaaacaagctacaccccca
attgaattggatgctgtctgggaggatatcagagatagatttgtgaaggaaccagcattt
gaagacatcactctagaatctgaaagaaaaagaatctttaaagactttatacacgtacta
gagcacgagtgtcaacatcatcattcaaagaataagaaacattctaaaaagtctaaaaag
catcacagaaaacggtctcgctcccgttcgggctcagagtctgatgatgatgatagccat
tcaaagaagaagaggcaacgctcagaatctagatcagtttctgatcgttcttccagtgca
gaatctgagagaagttacaagaagtcaaaaaaacataagaagaaaaacaaaaagagaaga
cacaagtctgattcaccagaatctgatactgaacgagaaaaggataaaaaagaaaaagag
agagagaatgaaaaggatagacctagacaaagatcggaatcaaagcataaatctcctcct
aaaaaacggcctggaaaagattctggtaattgggatacatctggcagtgaactgagcgaa
ggggaattagaaaaacagagaagaaccctcttggaacaactggatgaagatcaataa
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