Caretta caretta (Loggerhead turtle): 125644880
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Entry
125644880 CDS
T09292
Symbol
DDX18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125644880 (DDX18)
03009 Ribosome biogenesis [BR:
ccay03009
]
125644880 (DDX18)
Enzymes [BR:
ccay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125644880 (DDX18)
Spliceosome [BR:
ccay03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125644880 (DDX18)
Ribosome biogenesis [BR:
ccay03009
]
Eukaryotic type
90S particles
Helicases
125644880 (DDX18)
Pre-60S particles
125644880 (DDX18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
125644880
NCBI-ProteinID:
XP_048725515
LinkDB
All DBs
Position
11:61443585..61464500
Genome browser
AA seq
656 aa
AA seq
DB search
MAAAGNLPMLLLRRKIHKRNLKLRQRNLALQGAGPPVETRSVDTSEEATNNVISEESVEE
LKVKNVKQPQLITNGEVAAEAKNSESKKKKKKRQIINTEEGTETKKAKTEEQEEDADADD
AKDSKDPEVEENNEDPEEREVMDEDTEGPSLPLGVTGAFEDTSFASLSDLISENTLKGIT
DMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAIELIYKLRFMPRNGTGVL
ILSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATPGRLLDH
MQNTPGFMFKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLA
KISLKKEPLYVGVDDNKEAATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSC
MSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVD
WIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRYLKQARVPLSEFEFSW
SKISDIQSQLEKLIEKNYFLHKSAQEAYKAYIRAYDSHSLKQIYNVNNLDLPKVSLSFGF
KVPPFVDLNVNSSQGRRFQKRGGGGGFGYQKSKNVHKSKIFKHINKKKSDSRQFSR
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgggaacctgcctatgctgctgctccgcaggaagatccacaagcgcaac
ctcaagctgcggcagcgcaacctggcgctacagggggccgggccaccagtggagacaaga
tctgtggatacctctgaggaagctacgaacaatgtcatttctgaggaatcagtggaggaa
cttaaagtgaagaatgtaaagcaacctcaactaatcactaatggtgaagtagctgcagaa
gcaaaaaattctgaatcgaagaagaagaagaagaaaaggcaaattattaacacagaagag
ggtacagaaactaaaaaagcaaagactgaagaacaagaggaagatgcagacgcggacgat
gcaaaagatagcaaggatcctgaagtagaagaaaataacgaggatcctgaagagagagaa
gtaatggatgaggatactgaagggcccagtttacctcttggtgtaacaggtgcttttgaa
gacacctcatttgcttcactgtctgatcttatcagcgagaacacgctgaaaggaataact
gatatgggctttacacacatgacagaaattcagcataaaagtattaaaccccttctggaa
ggcagagatattctagcagctgcaaaaacgggcagtggcaaaacacttgcattccttatt
cctgccatagagctcatctacaagttaagattcatgcccaggaatggaacgggtgttctg
attctttcacctactcgagagcttgccatgcagacttatggagttctgaaagaactgatg
actcatcacgttcacacctacggcctgataatgggaggcagtaacagatcagctgaggca
cagaaacttgcaaatgggatcaacattatagtggcaacaccaggtagacttctggaccac
atgcagaacaccccagggtttatgttcaagaacctgcagtgtctggtaattgatgaagca
gatcgcatcctggaggttgggtttgaggaagaaatgaaacagatcataaaacttctacca
aagcgcagacagaccatgcttttttctgctacacaaacccgaaaggttgaagacttggct
aagatatctctgaaaaaggagccactgtatgttggggttgatgataacaaggaagcagcc
acagtagatggtcttgaacagggatacgtagtgtgtccatccgaaaaaaggttccttctg
ctgttcacgttcctcaagaaaaatcggaagaaaaagctgatggtatttttctcatcgtgt
atgtctgtgaaataccactatgaactactcaactatatcgacttgccagtcatggccatt
catggcaagcagaaacaaactaaacggaccaccacatttttccagttctgtaatgcagat
tctggaatattgttgtgcactgatgtagctgccagaggactggatattcctgaagttgat
tggattgtccagtatgaccctccagatgaccctaaggagtacattcatcgtgttggtaga
actgccagaggtataaatggcagaggacatgctctactcattttacgaccagaagaattg
ggtttccttcgttacctaaagcaagccagggtaccattaagtgaatttgaattttcctgg
tcaaaaatttcagacatccagtctcagcttgaaaaattgattgagaagaactatttcctt
cacaagtcagcccaggaagcatacaaagcatacattagagcttacgactcccattctctg
aaacagatctataacgtcaataacttggatctacccaaagtttccctttcatttggtttc
aaagtccctccgtttgttgatctcaatgtgaacagcagccaaggtagaagatttcaaaaa
agaggcggaggtggagggtttggttaccagaaatccaagaatgtccacaaatccaaaatc
ttcaaacacattaacaagaaaaagtcagacagccggcagttttctcgttga
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