Caretta caretta (Loggerhead turtle): 125645149
Help
Entry
125645149 CDS
T09292
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ccay
Caretta caretta (Loggerhead turtle)
Pathway
ccay03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125645149 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccay03041
]
125645149 (SF3B1)
03036 Chromosome and associated proteins [BR:
ccay03036
]
125645149 (SF3B1)
Spliceosome [BR:
ccay03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125645149 (SF3B1)
Complex B
125645149 (SF3B1)
Complex C
U2 SnRNP specific factors
125645149 (SF3B1)
Chromosome and associated proteins [BR:
ccay03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125645149 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
125645149
NCBI-ProteinID:
XP_048726233
LinkDB
All DBs
Position
11:21595908..21635313
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGTSSQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSVGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaagga
aaaaaggctgcccttgatgaagctcagggagtaggccttgattccacaggatactatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgaattagaagatgatgatgacgactactcctctacaagtttgcttggtcagaagaag
ccagggtaccatgctccagtggcattacttaatgacataccacagtcaactgaacagtat
gatccctttgctgaacatcgtccacagaagattgcagatcgagaagatgaatacaaaaag
cacaggcggatgatgatcatttctcctgagcgccttgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagcagaaaaagctaaagctggggaactt
aaagtcgtcaatggcacctcctcccagccaccttcaaaacgcaaacggcgttgggatcaa
acagctgaccagactcctggtactactcctaaaaaactatccagttgggatcaagcagag
acccctggacatactccttctttgaggtgggatgaaactcctggccgtgcaaagggtagt
gagactcctggagcaaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggatacacctggtcatgcaactccaggccatggaggt
gcaacttccagtgcacgtaaaaatcgatgggatgagacccccaaaacagaaagagataca
ccgggacatggcagtggatgggctgagactcctcgtacagatcgaggtggtgattcagtt
ggtgaaaccccaactcctggagcaagtaaaagaaagtcacgttgggatgaaacacctgct
agccaaatgggtggtagtactcccgttttgacacctggcaaaacaccaattggtacacca
gccatgaacatggcaacccctacaccaggtcatataatgagcatgactcctgaacagcta
caggcatggcgctgggaaagagaaatagatgagagaaaccggccactatctgatgaagaa
ctggatgccatgttcccagagggatataaggttcttccccctccagctggttatgtgcct
attcgtactccagctcgcaaacttacagcaactcccacaccattgggtggtatgactgga
ttccacatgcaaacagaagatcggaccatgaagagtgttaatgaccaaccatctggaaat
cttccattcctaaaaccagatgatattcaatactttgataaactactggttgatgttgat
gaatcaacacttagtccagaagaacagaaagaaagaaaaataatgaaattgctcttgaaa
ataaagaatggtacacctccaatgagaaaagctgctttgcgccagattactgataaagct
cgtgaatttggagcaggtccgctgtttaatcagattctacctctgctgatgtcaccaaca
cttgaagatcaagaacgtcacttgcttgtcaaagttattgacagaatcttgtacaaactg
gatgatttggtccgaccatatgtacacaagattcttgtggtcattgaaccactactgatt
gatgaagactactatgcgagagtggaaggcagagaaattatatcaaacttggctaaggct
gctggtttggctacaatgatctccaccatgcgacctgatattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgttgtcgcctctgctttaggcattccttct
ctgttgcccttcttgaaagctgtatgtaagagcaaaaaatcctggcaagctaggcacact
ggcatcaagattgtacagcaaattgctattcttatgggctgtgctatcttgcctcatctc
agaagtttggttgaaatcattgaacatggtttggtggatgagcagcagaaagtgcgtact
atcagtgctttggctattgctgctttggctgaggcagctactccttatggtattgaatca
tttgactccgttctaaagcccttatggaagggtatacgtcagcacagaggaaagggtctg
gctgcctttttgaaagctattgggtatcttatccctcttatggatgctgagtatgccaac
tactataccagagaagtaatgctaatccttatcagagagttccagtctcctgatgaagaa
atgaaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacagatggcgttgaagca
aactacattaaaacagagattctgccgccatttttcaaacacttttggcagcacagaatg
gcactggacagaagaaattacagacagctggttgatacaacagtggagctggcaaacaaa
gttggagcagcagaaattatttccaggattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggttatggaaacaattgagaaaataatggggaacctgggtgcagcagac
attgaccataaactagaagaacaacttattgacggtatcctgtatgccttccaggaacag
accacagaggactctgtgatgttgaatggctttggcacagtggttaatgctcttggcaaa
cgagttaaaccgtacttgccccagatctgtggtacagttttatggcgtttgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctcgcgtactgcagttgttatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtcctgtatgagtatctgggt
gaggaataccctgaagtattaggcagtatacttggagcacttaaagccattgtgaatgtt
ataggtatgcacaagatgacgccaccaatcaaggacctgctgccaagactcacacctatc
ttgaaaaacagacatgagaaagtacaggagaattgtatcgacctagttggtcgtattgct
gacaggggagcagaatatgtttctgcaagggaatggatgaggatctgctttgaactgctg
gagttgttaaaagctcacaagaaagctatccgacgagccacagtaaatacttttggttat
attgcaaaagctattggaccccatgatgtgctggctacactgctaaataacctgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcacctttcacagtactgcctgctctgatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtattaaaatctctttcttttctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccactgcttgaagacgctttaatggacagagaccttgta
cacagacaaacagccagtgctgtggtgcagcatatgtctcttggagtatatggatttggc
tgtgaggattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgagacatct
cctcacgtcattcaggcagttatgggagcactggagggcctaagagttgccattggacca
tgtagaatgctgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtgtattggaagatttataattcaatctatattggctcacaggatgccctgatagcacat
tatccaagaatctacaatgatgaaaagaacacctacattcgttatgaacttgattacatc
ttataa
DBGET
integrated database retrieval system
