Caretta caretta (Loggerhead turtle): 125645226
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Entry
125645226 CDS
T09292
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ccay
Caretta caretta (Loggerhead turtle)
Brite
KEGG Orthology (KO) [BR:
ccay00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccay04147
]
125645226 (COL18A1)
00535 Proteoglycans [BR:
ccay00535
]
125645226 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ccay00536
]
125645226 (COL18A1)
Exosome [BR:
ccay04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125645226 (COL18A1)
Proteoglycans [BR:
ccay00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125645226 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ccay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125645226 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125645226
NCBI-ProteinID:
XP_048726453
LinkDB
All DBs
Position
11:2974377..3212185
Genome browser
AA seq
1576 aa
AA seq
DB search
MAPAEQRLCLLLLLTCCCSLVETQFFDWFWGSRKAPKVTTLPPTESPASEGQTAEPLTSP
VATTTRAAVPATAQPGDQVWSKLAVTRPAPAADTAVPAPASPSLPQDQGENIAGVGAEIL
DVAEGIRSLVQLWDEGTTWRTGNAGEPTAAAPRTTTRTSLAAPSSATGLAGHGNMTANST
GDGHGLLGTGQPEASLPMPTGPPPAWNRTRALLQKPAAAPPGSASFPFSSEHFSTEVSLL
QLIGDPPPEQITKVIGPDNTLAYVFGPDANTGQVARYHLPSPFYRDFSLLFHVQPTTDKA
GVLFAITDASQTVIYVGVKLSTVQDRKQQIIFYYTEPGSESSYAAATFSVPSLANEWTRF
AISVEDDEVVLYLNCEEFRRVRFERSPDEMELEDGSGLFVGQAGGADPDKYQGVIADLKV
TGDRQAADLQCEEQDEDSDVASGDFGSGVEERPHLSGRERGTPAVSRLPEPPPVTSPPTA
EETVEKVSVGSQLQTKQIQVEGPQQVSTAARVGPKGEKGAPGERGERGPKGDSGTGGVLA
AGSTKGDKGEKGDLGVKGSAGFGYPGLKGQKGDPGAQGSPGPAGPPGPPGSMVQRLDGSV
VEQVAGPPGPTGPPGLPGEDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKG
EPGVGARGPPGLPGPPGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGV
PGLPGEPGRFGMNSTELPGPPGLPGRAGVPGAKGLPGPAGPPGENGSAGQPGLRGERGDP
GDLGLPGAPGPKGSKGEMGLAGAPGETGLAGLPGPMGPRGPPGPPGPAGPPGPGYEVGFG
DMEGSGMPFFSTFPGERGPEGLQGPPGIPGLKGDTGSPGLPGLPGQKGDHGAPGVDGRPG
LEGFPGPQGPKGDKGIQGAKGERGQDGVGSPGPPGLPGPPGQVIYASGEEKALAGLPGPE
GRQGQAGFPGPVGAKGDSGEPGFPGTPGPKGEKGEPGAIISPDGTGISAGMKGDKGEQGL
VGPMGPAGRHGQPGQKGEIGFPGRPGRPSMNGLKGEKGDPGGLGLQGPPGLPGPPGAPGS
VVSIYDNNAFSESGLPGPPGLPGYQGAPGQKGERGDTGAPGPPGQFPYDLNEFGSTFRGE
KGDRGDPGLKGEKGESGGGGLYGPSVTGPPGPQGYPGLPGPKGDSVRGLPGPPGPQGPPG
IGYEGRQGPPGPPGPPGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGLLTSSGQLRILP
SYQSMLSTAQEVPEGWLVFAQDREELYVRVRSGFRRVRLEEHTSLSSPGLDNEVYDKPPS
VHYSHGGADSSGSLHPRREHNPSSTARPWRADDSIANHHRLPDHSPHSARPQQELLDSFP
PRRRGQSAPSAGHTHHDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLTGTFRA
FLSSRLQDLYSIVRRADRSGVPIVNLRDEVLFNNWEALFSGTEAQFQAGARILSFDGRDV
LRDSAWPQKNVWHGSDAKGHRLTESYCETWRTDNSVVTGQASSLASGKLLEQKVSSCQNA
FIVLCIENSFMTSSKK
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctgagcagcgtctgtgtctcctgctcttgctaacctgctgctgctccttg
gtggagacacaattttttgactggttctgggggagccgaaaagcccccaaggtaacgacc
ctgccccccacagagagccctgcttcggagggacagacggcggaaccacttacctctcct
gtggccaccacgacacgggcggctgtgccggcgaccgcgcagccaggggaccaggtatgg
agcaagctcgcagtcacgcggccggcaccagccgcggacaccgctgtccccgctccggca
tcaccttccctgccccaggaccagggggagaacattgcaggggtgggggctgagatcctg
gacgtagcagagggcatcaggagcctggtccagctatgggatgaggggaccacctggagg
actggaaacgcaggggagcccacagccgctgcgcctcggacaaccactcgcaccagtctg
gctgctcccagctctgcaacggggctggctggccatgggaacatgactgccaactcgaca
ggggatggccacggcctgctggggaccgggcagccggaggcttcgcttcccatgccaaca
ggccctccgcctgcctggaacaggacacgggcgctcttacagaagcctgcggcagctcct
ccaggtagtgcttctttcccgttttcatcagaacatttcagcacagaagtgagtcttttg
cagctgattggagatcccccaccggagcaaataaccaaagtcattggccccgacaacact
cttgcctatgtcttcgggccggatgccaacaccggtcaagtggcccggtaccatcttcct
agccccttttatagagacttctcgctccttttccacgttcagcccacgaccgacaaggct
ggcgtactctttgccatcacagatgcctcgcagacggtcatctacgttggagtgaagctc
tccaccgtgcaggacaggaagcaacagatcatcttctactacacggagccgggctccgag
agctcatatgcagctgcaactttctctgtgccttccctggcgaacgagtggactcgcttt
gccatcagcgtggaggatgacgaggtggttctgtacctgaactgtgaggagtttcgccgg
gttcgctttgagcgttctcccgatgagatggaactggaggatgggtctgggctctttgtg
ggtcaggctggaggggctgatccagataaataccagggggtgattgcagatctgaaagtg
acaggtgatcgccaagcagctgatctccagtgtgaggaacaggacgaggattcggatgtg
gcgtctggagattttggaagtggagttgaagaaaggccccacctatcaggaagggagcgg
gggaccccggctgtgtcgcggctcccggaacctccccccgtcacgtctccccccaccgct
gaggagacagtggagaaagtgagcgtgggctctcagctgcaaaccaagcaaatccaagtg
gaaggaccccagcaagtttctacagcagccagggttggtccaaaaggtgaaaagggcgcc
ccgggagagagaggtgaacgtggcccaaaaggggactctggaaccggcggggttctagca
gccggcagcaccaaaggtgacaagggggaaaaaggagacctgggcgttaagggaagtgca
ggatttgggtatcccggcttgaaggggcagaaaggggacccaggtgcccagggatctccc
ggccccgctggcccgcctgggccccctggctctatggtgcagcgcctggacggctctgtg
gtggagcaggtcgccgggcctccaggaccaacaggccccccagggctgcccggggaagat
ggcctccctggcaaggatggagagcccggtgatcctggtgaggacgggaaacctggtgac
gttgggccccagggattccctggaactcccggagagcctggcctcaaggggcagaagggt
gagcccggagtcggcgcaagaggcccccctggactgcccgggccgcccgggacaccgggc
ctctcttccaaacaggacaagctgacgttcatcgacatggaaggctctgggtttggaggc
gatctggaaagcttccggggcccccgaggcccaccagggccccccggacctcctggggtg
cccggcctgccaggagagccaggaagatttgggatgaacagcactgagctgccaggaccc
cccggcctgccaggcagagctggcgtccccggagccaaaggcctaccaggtcctgcgggt
cctccaggagaaaatgggtctgccggccagcctgggcttcgaggagaacggggggaccca
ggtgacctaggcctccccggagctcctggacccaagggcagtaagggcgagatggggctg
gcgggagccccaggagaaaccgggctggcaggccttcctggacctatgggaccacgagga
ccaccaggtcccccaggccctgctggacctcctgggccaggctacgaggttggatttggc
gacatggaaggctcggggatgcctttcttttctacctttcctggagaacgcggacccgaa
gggctgcaggggccaccaggaatccccggactcaagggggacactggcagccctgggctg
cctggcttgccaggacaaaagggggaccacggggctccaggtgtggatgggcgcccaggg
ctggaaggtttcccaggacctcagggacccaaaggtgacaagggcatccagggggctaag
ggtgaacgaggccaagatggagtgggctccccaggcccccctgggctccctggacccccg
gggcaggtcatctatgcgtcgggtgaagagaaagcattagctggtttaccaggccctgag
ggcagacaaggccaagctggcttcccgggcccagtgggagctaaaggagactcaggagag
ccaggtttcccaggcactccaggaccaaagggtgagaaaggagagcctggagcgatcatc
agcccagatgggacgggcatctcggccggcatgaaaggagacaagggtgagcaggggctc
gtgggacccatgggcccagcgggccggcatggacaacctggacagaagggggaaatcggc
tttcctggcagaccgggccgtcccagcatgaacggactgaagggcgagaagggggacccc
ggagggctcggcttgcagggtcctccgggtctccccgggcccccaggtgcccctggcagt
gtagtgtccatctacgacaataacgcatttagtgagtcgggccttcccggccctccagga
ttgcctggctaccagggtgccccaggacaaaagggtgaacgaggcgacacaggtgcccca
gggcccccaggccagttcccctatgatctcaacgaatttggttccaccttccggggtgaa
aaaggagaccggggggaccctggactgaaaggagaaaagggggagtctggcgggggagga
ctgtacggaccaagcgtcactggacctccaggtcctcagggctatcctggccttccgggt
cccaagggggacagcgttagaggcctgcctggccccccagggcctcagggaccccctggt
attgggtacgaggggcggcagggcccccctggtccccctgggcctcccgggcccccctcc
tttccaggaccccacagacaaactgtcagcatccctggcccacctggaccgccagggcca
ccgggacctccagggaccagcgggttgttgacctcctccgggcagctgcggatcttgcca
tcgtatcagtccatgctgagcacggcccaggaggtgcccgagggctggctggtcttcgca
caggacagagaagagctgtacgtccgggtgcggagcggcttccggagagtccggctggag
gaacacacttccctctccagcccggggctggacaacgaagtgtacgacaagccgccgagt
gtccactactcgcatggcggcgctgactcctccggctccctgcacccgcgccgagagcac
aacccctcctccacagcccggccctggcgagcggacgacagcatcgccaaccaccaccgc
cttcccgaccactcgccccacagcgcccggccccagcaagagctgctggacagcttcccc
ccacgccgtcggggccagagcgccccctccgctggccacacgcaccacgacttccagccc
gccctccacctggtggcgctgaacgccccactgagcggcagcatgcgcggcatccgggga
gccgacttccagtgcttccagcaggcccgggcagtcgggctgacgggcacgttccgagcc
ttcctgtcctcccggctgcaagacctgtacagcatcgtgcgcagggccgaccggagcggg
gtgcccatcgtcaacctccgggatgaagtgctgtttaacaactgggaggcgctgttctcg
ggcacggaggctcagttccaagctggcgctcgcatcctctcgttcgacggaagagatgtc
ctgagagactctgcatggcctcagaagaacgtgtggcacggctctgacgccaagggccac
cggctcacagagagctactgcgagacatggaggacggacaacagcgtggtgacgggccag
gcctcctcgctggcctcgggcaagctcctggagcagaaggtgagcagctgccagaacgcc
ttcatcgtcttgtgtatcgagaacagcttcatgacctcttccaaaaagtga
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integrated database retrieval system
