Couchioplanes caeruleus: COUCH_13175
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Entry
COUCH_13175 CDS
T08133
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ccaz
Couchioplanes caeruleus
Pathway
ccaz02020
Two-component system
ccaz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccaz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
COUCH_13175
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
COUCH_13175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaz03021
]
COUCH_13175
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ccaz02035
]
COUCH_13175
Transcription machinery [BR:
ccaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COUCH_13175
Bacterial motility proteins [BR:
ccaz02035
]
Flagellar system
Flagellar assembly proteins
Stator
COUCH_13175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_Tnp_ISL3
HTH_23
RM44_endonuclase
Sas-6_C_CC
KORA
Motif
Other DBs
NCBI-ProteinID:
UQU67158
LinkDB
All DBs
Position
2817832..2818734
Genome browser
AA seq
300 aa
AA seq
DB search
MTDTTELPATIGTTHDAPSARDIEDLVREHMPMVGHLVRELLNRVPGHVHADDLSSAGFA
ALLGAARAFDVTRGIPFHRFAAVRIRGALLDELRGQDWASRSVRARARRTAQARQELTAA
LGRTPSEAEVAEMLGIGVAELAAVEDDVQKAALLSLQGFPTGAAEEMVPELSEGPEDLLL
KRERLGYLHQAIQALPERLRMVVTQSFLQEQPLSEVAAELGVTESRISQLRTEALRLLRE
GLNSSLAPELLTVAAGGPRTRKGCLQRRRSEYFARVAEQGNLHTRLALTDSHGVPIAFAA
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacacgaccgaactccccgccaccatcggcacgacccacgacgcgccctccgcg
cgggacatcgaggacctggtccgcgagcacatgccgatggtgggccatctggtccgggag
ctgctgaaccgggtgcccggccatgtccacgccgacgacctgtcgtccgccgggttcgcc
gcgctcctcggggccgcccgcgcgttcgacgtgacccggggcatcccgttccaccggttc
gccgccgtgcggatccgcggcgcgctcctcgacgagctgcgcgggcaggactgggcgagc
cgttccgtacgggcccgggcgcgccgcaccgcgcaggcgcgccaggagctcacggccgcg
ctggggcgtacgccctccgaggccgaggtcgccgagatgctgggtatcggggtggcggag
ctggcggccgtcgaggacgacgtgcagaaggcggccctgctcagccttcagggtttcccg
accggcgcggccgaggagatggtgccggagctctccgagggacccgaggacctgctgctg
aagcgggaacggctgggctacctgcaccaggcgatccaggcgttgccggagcggttgcgg
atggtggtcacccagtcgttcctgcaggagcagccgctcagcgaggtcgccgccgagctg
ggtgtcaccgagtcgcggatctcgcagctgcggacggaggcgttgcgcctgctgcgcgag
gggctgaacagctcgctcgccccggagctgctgaccgtggcggcggggggaccgcggacg
cggaaggggtgcctccagcgccggcgcagcgagtacttcgcgcgggtggccgagcagggg
aacctgcacacccggctggcgttgacggacagtcacggcgtacccatcgctttcgcggcc
tga
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integrated database retrieval system
